Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C10
(890 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537519-1|CAD97771.1| 166|Homo sapiens hypothetical protein pr... 33 1.1
U36601-1|AAC27120.1| 883|Homo sapiens heparan N-deacetylase/N-s... 31 5.6
BC110589-1|AAI10590.1| 883|Homo sapiens N-deacetylase/N-sulfotr... 31 5.6
BC110588-1|AAI10589.1| 883|Homo sapiens N-deacetylase/N-sulfotr... 31 5.6
BC035711-1|AAH35711.1| 883|Homo sapiens N-deacetylase/N-sulfotr... 31 5.6
AF042084-1|AAB97086.1| 883|Homo sapiens heparan glucosaminyl N-... 31 5.6
AB208870-1|BAD92107.1| 364|Homo sapiens N-deacetylase/N-sulfotr... 31 5.6
AY607540-1|AAT02138.1| 111|Homo sapiens immunoglobulin heavy ch... 31 7.4
>BX537519-1|CAD97771.1| 166|Homo sapiens hypothetical protein
protein.
Length = 166
Score = 33.5 bits (73), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 636 LNKFWNWYSTLETSSALCFQSLTCQYLSPSTILSSTSRIIFIMMSRIL 493
L K N YS +TSS LC S +YL+P T+ ++ +SRI+
Sbjct: 110 LCKLPNQYSVHKTSSPLCTSSAITRYLNPCTLFFKCWVQTWVFLSRII 157
>U36601-1|AAC27120.1| 883|Homo sapiens heparan
N-deacetylase/N-sulfotransferase-2 protein.
Length = 883
Score = 31.1 bits (67), Expect = 5.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 392 SCRITASNLKLHSSLGL*RSCL*NPCA-----SQPGRCSPGPRSSDPWFQYRDRRFPLRE 228
S ++ L LHS+LGL R NP A ++P R PGP D W ++ E
Sbjct: 181 SAQLKGFPLFLHSNLGL-RDYQVNPSAPLLHLTRPSRLEPGPLPGDDWTIFQSNH-STYE 238
Query: 227 TVPPSALRTSRQAV 186
V ++LR + AV
Sbjct: 239 PVLLASLRPAEPAV 252
>BC110589-1|AAI10590.1| 883|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
2 protein.
Length = 883
Score = 31.1 bits (67), Expect = 5.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 392 SCRITASNLKLHSSLGL*RSCL*NPCA-----SQPGRCSPGPRSSDPWFQYRDRRFPLRE 228
S ++ L LHS+LGL R NP A ++P R PGP D W ++ E
Sbjct: 181 SAQLKGFPLFLHSNLGL-RDYQVNPSAPLLHLTRPSRLEPGPLPGDDWTIFQSNH-STYE 238
Query: 227 TVPPSALRTSRQAV 186
V ++LR + AV
Sbjct: 239 PVLLASLRPAEPAV 252
>BC110588-1|AAI10589.1| 883|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
2 protein.
Length = 883
Score = 31.1 bits (67), Expect = 5.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 392 SCRITASNLKLHSSLGL*RSCL*NPCA-----SQPGRCSPGPRSSDPWFQYRDRRFPLRE 228
S ++ L LHS+LGL R NP A ++P R PGP D W ++ E
Sbjct: 181 SAQLKGFPLFLHSNLGL-RDYQVNPSAPLLHLTRPSRLEPGPLPGDDWTIFQSNH-STYE 238
Query: 227 TVPPSALRTSRQAV 186
V ++LR + AV
Sbjct: 239 PVLLASLRPAEPAV 252
>BC035711-1|AAH35711.1| 883|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
2 protein.
Length = 883
Score = 31.1 bits (67), Expect = 5.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 392 SCRITASNLKLHSSLGL*RSCL*NPCA-----SQPGRCSPGPRSSDPWFQYRDRRFPLRE 228
S ++ L LHS+LGL R NP A ++P R PGP D W ++ E
Sbjct: 181 SAQLKGFPLFLHSNLGL-RDYQVNPSAPLLHLTRPSRLEPGPLPGDDWTIFQSNH-STYE 238
Query: 227 TVPPSALRTSRQAV 186
V ++LR + AV
Sbjct: 239 PVLLASLRPAEPAV 252
>AF042084-1|AAB97086.1| 883|Homo sapiens heparan glucosaminyl
N-deacetylase/N-sulfotransferase-2 protein.
Length = 883
Score = 31.1 bits (67), Expect = 5.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 392 SCRITASNLKLHSSLGL*RSCL*NPCA-----SQPGRCSPGPRSSDPWFQYRDRRFPLRE 228
S ++ L LHS+LGL R NP A ++P R PGP D W ++ E
Sbjct: 181 SAQLKGFPLFLHSNLGL-RDYQVNPSAPLLHLTRPSRLEPGPLPGDDWTIFQSNH-STYE 238
Query: 227 TVPPSALRTSRQAV 186
V ++LR + AV
Sbjct: 239 PVLLASLRPAEPAV 252
>AB208870-1|BAD92107.1| 364|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
2 variant protein.
Length = 364
Score = 31.1 bits (67), Expect = 5.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 392 SCRITASNLKLHSSLGL*RSCL*NPCA-----SQPGRCSPGPRSSDPWFQYRDRRFPLRE 228
S ++ L LHS+LGL R NP A ++P R PGP D W ++ E
Sbjct: 168 SAQLKGFPLFLHSNLGL-RDYQVNPSAPLLHLTRPSRLEPGPLPGDDWTIFQSNH-STYE 225
Query: 227 TVPPSALRTSRQAV 186
V ++LR + AV
Sbjct: 226 PVLLASLRPAEPAV 239
>AY607540-1|AAT02138.1| 111|Homo sapiens immunoglobulin heavy chain
CDR3 protein.
Length = 111
Score = 30.7 bits (66), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 261 SIPRSAIPAARNGTAFCAEDFKTSRVFWSAWCY 163
S+ S++ AA +CA FKT FWS + Y
Sbjct: 65 SLKLSSVTAADTAVYYCARGFKTYYDFWSGYYY 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,552,854
Number of Sequences: 237096
Number of extensions: 2477522
Number of successful extensions: 5782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5782
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -