Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C09
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical ... 74 2e-13
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical pr... 31 1.1
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 3.4
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 3.4
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 29 5.9
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 29 5.9
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 29 5.9
AL021447-4|CAB60285.3| 330|Caenorhabditis elegans Hypothetical ... 29 5.9
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical
protein T02H6.11 protein.
Length = 130
Score = 73.7 bits (173), Expect = 2e-13
Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Frame = +2
Query: 245 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHVVDERNFRIVRAIQ 409
+ +L K+A+ NL G +YGL D E P+VTEALRRL HV D+R R+ RA
Sbjct: 19 ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRLSRAHT 78
Query: 410 LSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQ 526
L++ LPK EWT+++++S YL P ++++E E+ R +
Sbjct: 79 LALHGEKLPKAEWTQWDQESWYLKPYLDEIEAEKKARAE 117
>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
F11C1.5a protein.
Length = 1804
Score = 31.5 bits (68), Expect = 0.84
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Frame = +2
Query: 257 SKWAYNLSGFNKYGL------LRDDCLHETPDVTE-ALRRLPSHVVDERN-------FRI 394
++W G+N GL R D H+ + + A +++P H++ + +
Sbjct: 1466 NQWMGGTGGYNTAGLGGIGGPFRLDAGHDVHQMPDFAKQQVPKHILKKAREIAKVEYAKK 1525
Query: 395 VRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 535
+R I +S ++ W K + S L +++Q+E ++ ERE W K
Sbjct: 1526 LREINMSEYDADAYEKVWNKVQAPSRKLASVIDQLEAKKKERE-WTK 1571
>Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical
protein ZK632.2 protein.
Length = 710
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 368 VVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 538
++D N +L MQ+ L ++ E+D LYL Q+EK+R +R+QW +E
Sbjct: 347 ILDTYNVLRKSNTKLRMQRKTLEANDYYD-EDDDLYLDR-TGQLEKQREKRKQWAEE 401
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 410 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 538
LS+ K +L K++ + E++ L Q EKERLERE EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 410 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 538
LS+ K +L K++ + E++ L Q EKERLERE EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 449 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 538
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 81 TEREKEEEELKKLKEKQEKRKLEREQEEKE 110
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 449 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 538
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 915 TEREKEEEELKKLKEKQEKRKLEREQEEKE 944
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 449 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 538
T+ E++ L + E+ EK +LEREQ EKE
Sbjct: 81 TEREKEEEELKKLKEKQEKRKLEREQEEKE 110
>AL021447-4|CAB60285.3| 330|Caenorhabditis elegans Hypothetical
protein F19B2.8 protein.
Length = 330
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 357 FHPMLLTRETSVLYVPYSSPCKKQSYLKKSGQN 455
FH +LL TS+LY+P +K SYL S +N
Sbjct: 199 FHSILLIA-TSLLYIPIMRHVRKFSYLPSSQKN 230
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 332 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 445
D ++ LR+ SH++ ER+F + AIQL+ + +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 332 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 445
D ++ LR+ SH++ ER+F + AIQL+ + +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,256
Number of Sequences: 27780
Number of extensions: 248084
Number of successful extensions: 971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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