Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C08
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.004
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.055
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.7 bits (81), Expect = 0.004
Identities = 33/126 (26%), Positives = 34/126 (26%), Gaps = 5/126 (3%)
Frame = +3
Query: 510 PPPXGGXGXXXXPPPPPPXXKTPXPRXGGGGXXXXPPXGXXXXXPQKXGQXPKKTSLXXX 689
PP G PPPPPP PR G PP G P P
Sbjct: 325 PPIGNGSSNSSLPPPPPP------PRSNAAGSIPLPPQGRSAPPPPPPRSAPS------- 371
Query: 690 XXXXXXPXXGAXXWXFPPXXPPPXKXXKXXPXPXXGG----PXPPXXXXXXXXXS-PPXX 854
P + PP PP P G PP S PP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL 431
Query: 855 PPXTPP 872
PP PP
Sbjct: 432 PPSAPP 437
Score = 32.3 bits (70), Expect = 0.097
Identities = 32/126 (25%), Positives = 34/126 (26%), Gaps = 4/126 (3%)
Frame = +3
Query: 504 KXPPPXGGXGXXXXPPPPPPXXKT----PXPRXGGGGXXXXPPXGXXXXXPQKXGQXPKK 671
K P G PPPPPP P P G PP P Q P
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS----APSTGRQPPPL 379
Query: 672 TSLXXXXXXXXXPXXGAXXWXFPPXXPPPXKXXKXXPXPXXGGPXPPXXXXXXXXXSPPX 851
+S P A P PP + P P PP PP
Sbjct: 380 SSSRAVSNPPAPPP--AIPGRSAPALPPLGNASRTSTPPV---PTPPSLPPSAPPSLPPS 434
Query: 852 XPPXTP 869
PP P
Sbjct: 435 APPSLP 440
Score = 32.3 bits (70), Expect = 0.097
Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Frame = +2
Query: 611 PXPPXGXXXXPPKXGXXPXKNFXAPRPPXXPXPXXXGPXLXFSPXXPPPPXXXKXXPX-P 787
P PP G PP P ++ AP P P + +P PPP + P P
Sbjct: 352 PLPPQGRSAPPPP----PPRS--APSTGRQPPPLSSSRAVS-NPPAPPPAIPGRSAPALP 404
Query: 788 XXGGA-----PPPXXXXXXXXXFPPXTPPXXPPXL 877
G A PP PP PP PP L
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL 439
Score = 29.1 bits (62), Expect = 0.90
Identities = 16/56 (28%), Positives = 18/56 (32%)
Frame = +2
Query: 176 PPPXXGXXXXXKXKXPLYPXXKKXPPPXPXXXXXPPGGGGPXPXXKKKXXGXGPXP 343
PPP PL P + PPP P P G P P + P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP-PPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/70 (30%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Frame = +2
Query: 611 PXPPXGXXXXPPKX--GXXPXKNFXAPRPPXXPXPXXXGPXLXFS-PXXPP-PPXXXKXX 778
P PP PP P AP P P P L P PP PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 779 PXPXXGGAPP 808
P P A P
Sbjct: 478 PAPAPAPAAP 487
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/77 (31%), Positives = 25/77 (32%)
Frame = -2
Query: 870 GGXXGGVXGGKXXXXXXXXXGGGAPPXXGXGXXFXXXGGGGXXGEXXKXGPXXXGWGXXG 691
GG GG GG GG G G GG G + GP G G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 690 GRGAXKFFXGXXPXFGG 640
G F G FGG
Sbjct: 247 FGGGLGGFGGGPGGFGG 263
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = -2
Query: 759 GGGGXXGEXXKXGPXXXGWGXXGGRGAXKFFXGXXPXFGGXXFXPXGGXGXXXPPPXXGG 580
G GG G P G+G GG G G FGG GG G P G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -2
Query: 297 GPPP-PGGXXXXXGXGGGXFFXXGXRGF 217
GPPP PGG G GG G GF
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGF 226
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.055
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 750 PPPXKXXKXXPXPXXGGPXPPXXXXXXXXXSPPXXPPXTPPXS 878
P P P P GGP PP PP PP P S
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 686 RPPXXPXPXXXGPXLXFSPXXPPPPXXXKXXPXPXXGGAPPPXXXXXXXXXFPPXTPPXX 865
+ P P P P +P PP P P GG PPP PP PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPP-------PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Query: 866 P 868
P
Sbjct: 783 P 783
Score = 30.7 bits (66), Expect = 0.29
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 510 PPPXGGXGXXXXPPPPPP 563
PPP G G PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 510 PPPXGGXGXXXXPPPPPP 563
PPP G PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 510 PPPXGGXGXXXXPPPPPPXXKTPXPRXGGGGXXXXPP 620
PPP G PPPPP P P GG P
Sbjct: 762 PPPPPPPGVAGAGPPPPP---PPPPAVSAGGSRYYAP 795
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +2
Query: 662 PXKNFXAPRPPXXPXPXXXGPXLXFSPXXPPPPXXXKXXPXPXXGGAPPP 811
P P P P P + P PPPP P G PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP------PGVAGAGPPPP 778
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 248 PPPXPXXXXXPPGGGGPXPXXKKKXXGXGPXP 343
P P P P GG P P G GP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.90
Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Frame = +2
Query: 641 PPKXGXXPXKNFXAPR-PPXXPXPXXXGPXLXFSPXXPPPPXXXKXXPXPXXGGAPPPXX 817
P P + AP PP P P P + PP P P P A PP
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Query: 818 XXXXXXXFPPXTPPXXPP 871
P P PP
Sbjct: 1106 KPSVAVP-PVPAPSGAPP 1122
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Frame = +2
Query: 620 PXGXXXXPPKXGXXPXKNFXAPRPPXXPXPXXXGPXLXFSPXXPP-PPXXXKXXPXPXXG 796
P G P G P PP P P P + PP P P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPV-PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS 1137
Query: 797 GAPP 808
GAPP
Sbjct: 1138 GAPP 1141
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = +2
Query: 611 PXPPXGXXXXPPKXGXXPXKNFXAPRPPXXPXPXXXGPXLXFSPXXPPPPXXXKXXPXPX 790
P P P G P PP P P P S PP P P P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPV-PVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163
Query: 791 XGGAPPP 811
A PP
Sbjct: 1164 PSVAAPP 1170
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/73 (28%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Frame = +2
Query: 596 GGXXXPXPPXGXXXXP-PKXGXXPXKNFXAPRPPXXPXPXXXGPXLXFSPXXPPPPXXXK 772
G P P P P G P A PP P P P S PP P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-PSEAPPVPKPSVGVPPVPPPST 1215
Query: 773 XXPXPXXGGAPPP 811
P P PP
Sbjct: 1216 APPVPTPSAGLPP 1228
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/95 (25%), Positives = 24/95 (25%), Gaps = 3/95 (3%)
Frame = +2
Query: 596 GGXXXPXPPXGXXXXPPKXGXXPXKNFXAPRPPXXPXPXXXGPXLXFS---PXXPPPPXX 766
G P P P G P PP P P P S P P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV-PAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 767 XKXXPXPXXGGAPPPXXXXXXXXXFPPXTPPXXPP 871
P P G P P P P PP
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 26.2 bits (55), Expect = 6.3
Identities = 23/109 (21%), Positives = 26/109 (23%)
Frame = +3
Query: 546 PPPPPPXXKTPXPRXGGGGXXXXPPXGXXXXXPQKXGQXPKKTSLXXXXXXXXXPXXGAX 725
PP P P P P+ G PP + P + P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPP---VPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097
Query: 726 XWXFPPXXPPPXKXXKXXPXPXXGGPXPPXXXXXXXXXSPPXXPPXTPP 872
PP P P P P P P P PP P
Sbjct: 1098 SVAAPP-VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Frame = +2
Query: 599 GXXXPXPPXGXXXXPPKXGXXPXKNFXAPRPPXX--PXPXXXGPXLXFSPXXPPPPXXXK 772
G P P P+ P + P PP P P P P PPPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 773 XXP 781
P
Sbjct: 1739 SAP 1741
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 510 PPPXGGXGXXXXPPPPPP 563
PPP G PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 510 PPPXGGXGXXXXPPPPPP 563
PPP G PPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.150 0.522
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,519
Number of Sequences: 5004
Number of extensions: 28655
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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