Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C07
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   3.4  
AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.8  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.8  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.8  

>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 549 LERTTYTELRYLQREL*ESATLPEGRKADRYPVSGRVGXRRAHEGAXQGE 400
           L+  T  +L  +QRE  E   +PEG+KA R P S      +++EG    E
Sbjct: 66  LKTITTQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPSTSE 114


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -1

Query: 359 LT*ASIFVMLVQGGGAYGKTPATAAFLRFLA----FCWPFAHMFFPAL 228
           +T  S+  +L  G G Y  TPA A F +F+A    F W +   FF A+
Sbjct: 369 ITVTSLTSVLSFGIGTYSTTPAIAIFCKFIALAIMFDWFYQLTFFAAV 416


>AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical
           protein C24H12.4b protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 390 IFIVLSGFATSDLSVDFCDARXGGRSLWKNASNRGLFTVPGLLLAFCS 247
           +F+ LS       +++ CD      S+W    +  + T PG LL  CS
Sbjct: 115 LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 162


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 390 IFIVLSGFATSDLSVDFCDARXGGRSLWKNASNRGLFTVPGLLLAFCS 247
           +F+ LS       +++ CD      S+W    +  + T PG LL  CS
Sbjct: 182 LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 229


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 249 SHVLSCVIXLILWITVLPPLSELIPLAA 166
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 249 SHVLSCVIXLILWITVLPPLSELIPLAA 166
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 249 SHVLSCVIXLILWITVLPPLSELIPLAA 166
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,019,652
Number of Sequences: 27780
Number of extensions: 382251
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)