Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C06
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...   125   1e-29
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    47   4e-06
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    35   0.018
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    29   0.88 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    29   1.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    28   2.0  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   6.2  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   6.2  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   8.2  

>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score =  125 bits (301), Expect = 1e-29
 Identities = 57/151 (37%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
 Frame = +3

Query: 135 YKDNIEQSLNDKSKPWTKYFEL--AEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNS 308
           ++  ++Q++ D       + +L   E+  GV++LY+FL       L+L   +G  L+ N 
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNL 62

Query: 309 IGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 488
           + F  PA+ S+ A+E+  K DDT+WLTY++V +  +++EY+S  I+ + P+YWLLK IF+
Sbjct: 63  LAFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFL 122

Query: 489 IWCYLPTEYNGSLVIYYRIIRPYYQKHHGRI 581
           IW  LP ++NG+ +IY  +IRPY   H  RI
Sbjct: 123 IWLALP-KFNGATIIYRHLIRPYITPHVIRI 152


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 25/90 (27%), Positives = 39/90 (43%)
 Frame = +3

Query: 363 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYR 542
           +++  + + YW VY C +  E      + W P Y   K +F +W   P    G+  IY  
Sbjct: 97  EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYAS 155

Query: 543 IIRPYYQKHHGRIDDMANTASRLVADTIRK 632
            I P+   H   I+   N   +LV  T R+
Sbjct: 156 YISPFLSDHKAAIN---NFLEKLVQFTTRQ 182


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = +3

Query: 264 LYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW--VVYACFSIVEYFSD 437
           L LVFG    LI   IGF+   Y  +  +E PQ      W T +  +++ C  I++    
Sbjct: 654 LILVFG----LIYFIIGFLVYKYELIYQMEHPQHSTGELWSTIFLRMIFGCV-IMQLTMM 708

Query: 438 FIVGWFPLYWLLKCIFVIWCY-LPTEYNGSLVI--YYRIIRPYYQKHH 572
            ++     YWL   IF + C+ + + YN S +I    + +  YY + H
Sbjct: 709 GLMSLRKAYWLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRTH 756


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 23/94 (24%), Positives = 41/94 (43%)
 Frame = -2

Query: 448 PTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELHINSAPKPNTK 269
           P+ K++ YS +++   TT +   F   +    +  F+  Y       +L + SA   N  
Sbjct: 122 PSYKAKTYSLVKEYKGTT-FFDGFDFMNITDPTHGFVQ-YLDRNSSAKLGLISANSSNV- 178

Query: 268 YKPVNATKPKKMYNLFTPTFCSASSKYFVHGLLL 167
              + A   K  Y+   P+    S++YF HGL +
Sbjct: 179 ---IMAADSKHNYSSGRPSIRLQSTQYFEHGLFI 209


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 289 APKPNTKYKPVNATKPKKMYNLFTPTFCSASS 194
           A K  +KYKP+N  KP  + +   PT  S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
 Frame = +3

Query: 213 VGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTY 392
           +G+ R  +F  L ++   +   G    ++      ++P+ +S  AL     D+D      
Sbjct: 207 IGIGRAILF-NLCSYLSSFGWSGLALPILVYPPTLIWPSVLSSCALFKIFHDNDNTKACN 265

Query: 393 WVVYAC-FSIVEYFSDFIVGWFP--LYWLLKCI--FVIWC 497
           W +    +  + + + FI  WFP  ++  L  +  ++ WC
Sbjct: 266 WTISRLRYFFIVFVASFIWYWFPDLIFPALSSLGAWISWC 305


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 156 SLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVF 278
           +++ K+K  TKY      ++  N ++I+LG+  FT + LV+
Sbjct: 307 NMSYKAKLSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVY 347


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 75  LRSHSG*PLKDRTMASKLQEYKDNIEQSLNDKSKPW 182
           +R H G P   +   + L EYK   E+S+ND S  W
Sbjct: 16  VRLH-GDPTVPKPNIASLDEYKRMYEESINDPSTFW 50


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 408 CFSIVEYFSDFIVGWFPLYWLLKC 479
           C  ++EYF  F    + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,107
Number of Sequences: 5004
Number of extensions: 78285
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)