Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C05
(935 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 32 0.10
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 32 0.13
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 31 0.31
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 30 0.41
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 30 0.41
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 29 0.71
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 28 2.2
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 27 3.8
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.6
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 8.8
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 26 8.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 8.8
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 8.8
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 26 8.8
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 8.8
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 32.3 bits (70), Expect = 0.10
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 208 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK 366
K +TV+GGG++G + V ++ G VT+V+ I LSR+ K
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISK 270
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 211 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKS 333
+V +IGGG G+G+A ++ G NV L++ ++ A + KS
Sbjct: 69 DVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKS 109
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 208 KNVTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 330
KN V G +G IA AQAG NV + ++ D KAKK
Sbjct: 22 KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKK 63
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 30.3 bits (65), Expect = 0.41
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 589 EIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMME-WGKSVGRLYHL 756
E++ V +F GLHF V R L G + Y+T + G++ G+ +HL
Sbjct: 250 EVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANGKYRTYPKIVGETGGKNFHL 306
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 30.3 bits (65), Expect = 0.41
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 211 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQ 387
NV V+G G + + Q + AG NVT+ S++ L AKK T+ YK PQ
Sbjct: 168 NVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTIN-----YKKTPQ 221
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 29.5 bits (63), Expect = 0.71
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 208 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAK 321
KNV VIGGG G A +++ G TL+ S D + +
Sbjct: 17 KNVVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQ 54
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 2.2
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 220 VIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALA--KAKKSIGTNLSRVAKKMYKDNPQEG 393
VIGGGL G G NV L+D N A K + G N + + +
Sbjct: 43 VIGGGLAGLSATNTILDLGGNVLLLD-KNTAFGGNSVKAASGINAAPTQLQFDQHVSDSV 101
Query: 394 EKFVNDSL 417
F NDS+
Sbjct: 102 NTFYNDSI 109
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 507 LHSNIFNNSLNNQISRFGSLCCISCSINPS 418
LH + SLNN+ S+ G C C NP+
Sbjct: 326 LHKSESGTSLNNRRSKVGPGSCFFCLSNPN 355
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 570 CV*CENSV-TWSYAIKLLKQFMLHSNIFNN 484
CV CE +W + +K + Q ++H+N N
Sbjct: 406 CVLCERKFQSWGHVVKHITQSIMHNNNLKN 435
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 196 QSAIKNVTVI--GGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIG 339
QS ++ +I GGG++G + V+A + + + + LA SIG
Sbjct: 101 QSCTRDTILIAMGGGVIGDLVGYVAASFMRGIRFIQMPTTLLAMVDSSIG 150
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 8.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 301 SNDALAK---AKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSAD 468
S DA+ K A K+ NL +V+ D P+ F ND + + +T A +K AD
Sbjct: 254 STDAVPKKLDASKASSLNLEKVS--YLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDAD 310
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 8.8
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -3
Query: 558 ENSVTWSYAIKLLKQFMLHSNIFNNSLNNQISRFGSLCCISCSINPSQ*VIHKFLSFLGI 379
+N + Y+ LL ML N+++ + + R G L + SQ V +FL
Sbjct: 250 DNQIPEQYSFDLLVSLMLRQNLYDINRRRLMIRIGLLALSNLVYAHSQAVQTRFLIADPE 309
Query: 378 IFVHL 364
I HL
Sbjct: 310 ITTHL 314
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.8 bits (54), Expect = 8.8
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Frame = +1
Query: 283 VTLVDVSNDALAKA--KKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEAS 456
+T V + LA+A K I + + K K P+E E F+ L N + E
Sbjct: 861 ITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKG 920
Query: 457 KSADLVVEAIVENIGVKHKLFKQLDGVAPSHTIFASNTSS---LSINEIASVVKRKD 618
+ D + I+ + +LFKQ+ + + N + ++E+ +R++
Sbjct: 921 ELDDDELNEILARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSELPEFYQREE 977
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 346 LSRVAKKMYKDNPQEGEKFV--NDSLGRINTATDAA--EASKSAD 468
+S++A+ NP + E+FV D+LG D+ EAS AD
Sbjct: 102 ISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKAD 146
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 241 GSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRV 357
GS + + A + +SND+LAKA S+ T++S++
Sbjct: 317 GSFTTHLDSNASMAKSFSQISNDSLAKA-SSVATSMSQM 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,869
Number of Sequences: 5004
Number of extensions: 66462
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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