Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C04
         (868 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    24   1.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.5  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 183 PPRLMS*CNSGMLPPKSFPEVYDVKCGFAN 94
           P R+M     G++PP+ +    D   G  N
Sbjct: 4   PGRMMGHTGGGLMPPQPYMNAQDAPAGGEN 33


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 694 PRQIHGLNWFHKM--TRASGQVACGSPVPKQNPFDRTKMAP 578
           P +I  L    K+  T  + +      +P QNP ++T +AP
Sbjct: 274 PERIQSLWVLEKICTTTDAAEFLAAQEIPGQNPGEKTNIAP 314


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 691 AVVWSGTLPARAPDPNAVYSPKVFL 765
           AVV  G  PA   D   +Y P+V L
Sbjct: 100 AVVHPGQSPAEKYDQQHLYHPQVLL 124


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 341 SPRSLVPPACFPPRHPRAFTSYSESAQPG 427
           SP  L+PP      HP   +S+     PG
Sbjct: 225 SPTGLIPPHPGLSPHPPHLSSHPAIVTPG 253


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 341 SPRSLVPPACFPPRHPRAFTSYSESAQPG 427
           SP  L+PP      HP   +S+     PG
Sbjct: 117 SPTGLIPPHPGLSPHPPHLSSHPAIVTPG 145


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 733 DPGHEPAEFHSILPR 689
           DP  +PA + ++LPR
Sbjct: 83  DPAKDPAIYSNLLPR 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,004
Number of Sequences: 336
Number of extensions: 5453
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)