Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C04
         (868 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    27   0.98 
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          24   5.2  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    24   5.2  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   9.1  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   9.1  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 0.98
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 29  REFLKI*VRWVLPLRLVTKGRLLANP 106
           REFL     +  P+ +V KGRLL NP
Sbjct: 428 REFLSKNATFSRPVSVVLKGRLLENP 453


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 753 RRVYSVRIRGTSRQSSTPYYRARSMV*TGSTK*RAPL 643
           R V   R RG+  +S T   R+RS   T  ++ R PL
Sbjct: 426 RSVSRSRSRGSRSRSRTSQSRSRSKTRTSRSRSRTPL 462


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +3

Query: 360 RLLVSRHVIHVRSRATANLLSLV-----RSGTMRSLHREIL*TSXASLGVNVAVSVTSLH 524
           RL  ++H+ +V  RA  N  +LV     RSG   S  R I  T  A +    ++   SL 
Sbjct: 724 RLEYTQHIKYVAERAVTNTNALVRMMPNRSGPRSSRRRIIANTIIAGIRYASSIWAESLK 783

Query: 525 VVC 533
             C
Sbjct: 784 FEC 786


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +1

Query: 484 PWALTLPSPSPRSMLSVPPPGRLSYDHLEQIMEPSWSDQMGSASAR 621
           PW        P S      PG   + H      P  S Q  SAS R
Sbjct: 159 PWYQLPQQQQPSSYHQQQHPGHSQHHHHHHHHHPHHSQQQHSASPR 204


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 581 SHLGPIKWVLLRHGRPACNLPRGA 652
           S LGP  W ++  G  A  LP GA
Sbjct: 639 SILGPTLWNIMYDGVLAVELPEGA 662


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,573
Number of Sequences: 2352
Number of extensions: 22980
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92613024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)