Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    40   5e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.7  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   6.3  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 520 MFGAIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKWV 669
           + G I +  +L +V       +EI+W+DF   +L+KG+VE+L V+N+  V
Sbjct: 136 ILGGILVAYILYNVLSPNANMQEITWQDFRQQFLDKGLVERLVVVNRNMV 185


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 323 RVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHHQINGT 433
           RV+ +K LK    M  LH+  P+ H NR L  Q+  T
Sbjct: 467 RVSYQKLLKSHV-MNKLHMAHPKSHTNRSLLRQLKNT 502


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 311 NTSNRVAV--RKTLKLRKKMQVLHLKVPRLHRNRPLHHQING 430
           N++NRV +  +K  +L       H K+ + HRNR  H+  NG
Sbjct: 289 NSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNG 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,586
Number of Sequences: 5004
Number of extensions: 56089
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)