Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C03
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0311 + 23014666-23014806,23015454-23015959,23016661-230170...    29   3.8  
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258...    29   5.0  
01_01_0739 - 5749703-5750035                                           28   8.7  

>03_05_0311 +
           23014666-23014806,23015454-23015959,23016661-23017051,
           23017192-23017292,23017542-23017644,23018048-23018120,
           23018244-23018659
          Length = 576

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 586 EISWRDFVNLYLNKG--VVEKLEVINKKWVPSKTSRECIRR 702
           E SW  F+  Y  +G  +++ L  I +KWVP+   +E  RR
Sbjct: 255 ETSWDQFIKSYDLEGCPIMKALYDIREKWVPAFFKKEYCRR 295


>11_06_0031 +
           19425011-19425113,19425552-19425637,19425732-19425829,
           19425950-19426067,19426200-19426289,19426770-19427074,
           19427162-19427357,19427435-19427617,19427713-19427982,
           19428906-19429151,19429633-19429704,19430087-19430104
          Length = 594

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 233 GCNLCPLKCIFDSCECVNL 177
           GC +C  KC FD+ E +NL
Sbjct: 57  GCGICVKKCPFDAIEIINL 75


>01_01_0739 - 5749703-5750035
          Length = 110

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 529 AIGIVTLLASVAYFELRYREISWRDFVNLYLNKGVVEKLEVINKKW 666
           A G   L A+VA   LRY +++W+D V  Y   G + K +   K+W
Sbjct: 23  AAGQAFLQAAVAD-ALRYTKMTWQDMVEEYRRAGKLHKYDP-GKEW 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,051,512
Number of Sequences: 37544
Number of extensions: 338431
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)