Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C03
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    52   7e-07
AF040661-14|AAG24220.1|  216|Caenorhabditis elegans Hypothetical...    29   4.5  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    29   5.9  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    29   5.9  

>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 22/48 (45%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
 Frame = +1

Query: 529 AIGIVTLLASVAYFELR-YREISWRDFVNLYLNKGVVEKLEVINKKWV 669
           A+ +  LLA  A+ + + YREISW++F + +L  G+VE+LEV++K+WV
Sbjct: 127 AVSVGILLALYAFMDYQSYREISWKEFYSDFLEAGLVERLEVVDKRWV 174


>AF040661-14|AAG24220.1|  216|Caenorhabditis elegans Hypothetical
           protein W10G11.13 protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 326 PGWKYFSKPLGGFLQ---NSYHCLKTES 252
           PGWK+F++P GG+     N Y   K E+
Sbjct: 46  PGWKFFNRPSGGWCMKVINEYKGAKAEA 73


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 326 PGWKYFSKPLGGF---LQNSYHCLKTESRA 246
           PGW++F++P GG+   +   +H  K ++ A
Sbjct: 258 PGWRFFNRPSGGWCIRVFTGFHAAKADAEA 287


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 269 CLKTESRAGTPTGCNLCPLKCIFDSCECV 183
           C K E++ G P  C  C L   F   +CV
Sbjct: 29  CQKNEAKYGKPGTCQYCKLNAAFHDQKCV 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,137,866
Number of Sequences: 27780
Number of extensions: 322198
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)