Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C02
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 34 0.18
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 32 0.72
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 32 0.72
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 31 1.7
01_01_0401 + 3043634-3043894,3045610-3045849 31 1.7
03_05_0373 + 23581812-23583293 30 2.2
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 29 6.7
06_02_0153 - 12319853-12319948,12320277-12320536,12320920-12320977 28 8.8
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 28 8.8
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100... 28 8.8
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 28 8.8
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 8.8
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = +1
Query: 484 EKNATALR-EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKA---AYDDFAKNTQ 651
EKNA L+ ++L+A ++N E ++ +VS+ +++ NE+L KI + ++ Q
Sbjct: 832 EKNAALLQVQQLEANLKNLESELEQKQSQVSA-LEQANEELREKISSLERQLEEARSKLQ 890
Query: 652 EVIKKIQGGRQR 687
+ I K+QG ++R
Sbjct: 891 DEIIKLQGEKER 902
>07_03_1615 - 28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 31.9 bits (69), Expect = 0.72
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Frame = +1
Query: 355 RLRQESPGXRSETRT------ARPRRLWNXXXXXXXXXXXXXXXXXLXVEKNATALR--E 510
RLRQE+ G E R AR L + L ++ A A+
Sbjct: 715 RLRQEAMGIEREVRAVGDAMAARMVDLQSAADDIGAAAGRSLENQMLLLDGQAKAMEGLN 774
Query: 511 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK---IKAAYDDFAKNTQEVIKKIQGGR 681
L + +QES++ +K++ Q+ E+L + I+ A+DD KN++ +++ + R
Sbjct: 775 HLYSFQAQALQESRETIQKLAQFGQQQQEELLSRQEQIRHAHDDLMKNSESILEAQEEFR 834
Query: 682 QRQA 693
+QA
Sbjct: 835 AKQA 838
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.9 bits (69), Expect = 0.72
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -2
Query: 450 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 292
P R SA T+ WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 99 PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 508 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 654
EKLQ + + QE+Q+L KK+SS V E +++ ++ + + A+ E
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEVASLKEALAQQEAE 200
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = -2
Query: 501 GGGVLLDVQGGPCGAPRPCARCSASTVP----KP---PWPCRSRLRALPWRLLAKALSCC 343
GGG + P +P A+C A VP +P P P R + L + C
Sbjct: 23 GGGGGKKLHQSPPPSPPEAAKCCADGVPVVMGEPLGAPAPPRESWNSGVLSCLGRNDEFC 82
Query: 342 STDSEPSFQALLKSC 298
S+D E SF+A K C
Sbjct: 83 SSDVEGSFEAFTKQC 97
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 483 DVQGGPCGAPRPCARCSASTVPKPPW 406
D GG A +RCSAST PK PW
Sbjct: 53 DGAGGYGSAASSPSRCSASTPPKSPW 78
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 595 EKLAPKIKAAYDDFAKNTQEVIKKIQGGRQRQAVSVDIELS 717
+ L P +K+ F + Q V+ +++GG QA + DIE S
Sbjct: 683 QDLLPPLKSEELIFKEKNQGVLTEVEGGSLHQAEAADIEHS 723
>06_02_0153 - 12319853-12319948,12320277-12320536,12320920-12320977
Length = 137
Score = 28.3 bits (60), Expect = 8.8
Identities = 26/91 (28%), Positives = 41/91 (45%)
Frame = +1
Query: 100 SSXLSLVDSTSWPAQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP*DFRTTV*LA 279
SS S+ D+TS A + R+ P S T R+L+ HR P TTV
Sbjct: 39 SSKKSMADTTSCLASPTRHVAAERAIPASMWPTEVERVLKQHRQPQSQE--TSTTTVLRW 96
Query: 280 HQVKGRTGLQQGLEGRLRVRAATAQRLRQES 372
H GR L+ ++ ++ + + +L+Q S
Sbjct: 97 HH--GRRQLKLQVDDQVNIFTQESGQLKQPS 125
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 481 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDD 633
+EK++ ++ E+ Q+ + Q+ +K AKKVSS E+ + K + Y +
Sbjct: 516 LEKSSKSILEETQSVGHTSQQKKRKKAKKVSSVDMESLDISGEKDQCGYGE 566
>03_01_0130 -
1007433-1007712,1007739-1007803,1007804-1008001,
1008103-1008273,1008405-1008553,1008780-1008927,
1009015-1009083,1009168-1009416,1009516-1009710,
1009869-1009985,1010205-1011329
Length = 921
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 197 VAPSLLGPERCRRRELRTCAGHDVLSTRLSXEE 99
+ PS+ G R E RTC H+ +TR S ++
Sbjct: 26 ILPSISGEAAINREERRTCDVHEAHATRSSIDQ 58
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 520 AAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 669
A TVQ + L +K+ SN+ + E+L + K + D+ + EVI+KI
Sbjct: 69 AFFSKTVQGAVDLIEKMVSNMGWSKERLQTRQKPSVDEQFAHFVEVIQKI 118
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -2
Query: 468 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 346
PC P P R ++T + PW R R + W L C
Sbjct: 26 PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,376
Number of Sequences: 37544
Number of extensions: 314918
Number of successful extensions: 1515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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