Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C02
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 34 0.16
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 32 0.49
AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical ... 31 0.85
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 31 1.1
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 31 1.1
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p... 30 2.6
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical p... 28 7.9
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 28 7.9
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +1
Query: 487 KNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKK 666
+N + +K VQ + QK+ KK + NVQ+ +K A K AKN Q++ KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQKMCKK 1320
Query: 667 IQGGRQRQAVSVDIEL 714
Q+ +E+
Sbjct: 1321 CAKNVQKMCKKYGLEV 1336
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 514 LQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQGGRQRQA 693
LQ A + VQ + K + SNV E + + I DD K ++ K ++ +
Sbjct: 306 LQKAEEEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITKELEKSAKSLEETTDKIG 365
Query: 694 VSVD 705
+D
Sbjct: 366 SKID 369
>AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical
protein ZK973.11 protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.85
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 239 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 346
+EFHKT E+ L K D + F AW DGS+ Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 31.1 bits (67), Expect = 1.1
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Frame = +1
Query: 535 TVQESQKLAKKVSSNVQETNEKLAPKIK---AAYDDFAKNT--------QEVIKKIQGGR 681
TVQESQ+L +KV V+E E PKI+ A D A T Q+VI+++
Sbjct: 911 TVQESQELQEKVKL-VKEAIEVQQPKIEDVVAKARDIAVKTQISRAVEKQKVIREMAETL 969
Query: 682 QRQAVSVDIELS 717
+R+A+S ELS
Sbjct: 970 ERKAISATFELS 981
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
protein C18H2.1 protein.
Length = 1770
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 152 VLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQ 301
V C++ + + D +F KDI+ K+ HKTLE + + K +D Q
Sbjct: 580 VFLECVSRLRKTAI--DGENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQ 627
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 514 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 642
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 514 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 642
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 514 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 642
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 514 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 642
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 514 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 642
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +1
Query: 514 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 642
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
protein R05D3.1 protein.
Length = 1053
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 182 GAMVRRDAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 337
G +A ++F D++HHT F T + + +D D K W SE+
Sbjct: 519 GTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 474 GGPCGAPRPCARCSASTVPKPP 409
GG CG P PC + + V PP
Sbjct: 65 GGGCGGPAPCGGAAPAYVAPPP 86
>Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical
protein ZK856.12 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 191 PSLLGPERCRRRELRTCAGHDVLSTR 114
PSLLG + E+RT GH +++++
Sbjct: 266 PSLLGTPKTTSTEIRTAVGHQIVASK 291
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +1
Query: 505 REKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQGGRQ 684
+EK++A + E +K+ K+ + E+ KIKAA ++ K E KK++ G++
Sbjct: 959 KEKVKAEEERLKAEEEKV--KIEKEKVKAEEQ---KIKAAEEERRKERAEDAKKVKEGQE 1013
Query: 685 RQAV 696
+ A+
Sbjct: 1014 KIAI 1017
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,939
Number of Sequences: 27780
Number of extensions: 237407
Number of successful extensions: 1126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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