Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B24
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13...    72   7e-13
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741...    71   9e-13
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    33   0.23 
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744...    33   0.40 
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...    29   6.6  

>02_01_0022 -
           135655-135717,137426-137482,137559-137678,137762-137920
          Length = 132

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 28/45 (62%), Positives = 37/45 (82%)
 Frame = +2

Query: 185 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 319
           ++ S+G+P+K+LHEA GHVVT E  TGEVYRG ++E EDN NCQ+
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQL 45



 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 28/41 (68%), Positives = 39/41 (95%)
 Frame = +3

Query: 324 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 446
           ++T T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 47  NITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87


>03_02_0318 +
           7417361-7417519,7417638-7417690,7417770-7417836,
           7417925-7417981,7420005-7420067
          Length = 132

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 28/45 (62%), Positives = 37/45 (82%)
 Frame = +2

Query: 185 VNMSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 319
           ++ S+G+P+K+LHEA GHVVT E  TGEVYRG ++E EDN NCQ+
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQL 45



 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 28/41 (68%), Positives = 39/41 (95%)
 Frame = +3

Query: 324 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKR 446
           ++T T +DG+V+QLE+V+IRGS++RF+I+PDMLKNAPMFKR
Sbjct: 47  NITFTAKDGKVSQLEHVFIRGSRVRFMIIPDMLKNAPMFKR 87


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 203 VPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 319
           +P+ +L  A+GH +  E   GE Y G L+  +  MN  +
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL 40


>04_04_0192 -
           23471346-23471572,23473004-23473195,23474342-23474418,
           23475810-23475850,23475928-23475974,23476108-23476194,
           23476807-23477011,23477747-23477866
          Length = 331

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +3

Query: 324 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGRGKSAI 488
           ++ +T +      L+++ +RG+ IR+ ILPD L    +      + +  KPTAGR   A+
Sbjct: 204 TVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAV 263


>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 324 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMF-----KRQGNKPTAGR 473
           ++ +T +       +++ +RG+ IR+ ILPD L    +      + +  KPTAG+
Sbjct: 42  TVKLTLKGKNPVTFDHLSVRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGK 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,101
Number of Sequences: 37544
Number of extensions: 310660
Number of successful extensions: 771
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)