Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B24
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    81   1e-15
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    66   3e-11
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    31   1.4  
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U53140-2|AAA96102.1|  134|Caenorhabditis elegans Hypothetical pr...    29   5.8  
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    29   5.8  

>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 35/42 (83%), Positives = 39/42 (92%)
 Frame = +2

Query: 194 SIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQM 319
           S+GVPIK+LHEAEGH+VT ET TGEVYRGKL EAEDNMNCQ+
Sbjct: 3   SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQL 44



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = +3

Query: 333 VTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQG 452
           VT+RDGR  QL+NV+IRG+KIRF+ILPDMLKNAPMFK  G
Sbjct: 49  VTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIG 88


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +3

Query: 333 VTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFK 443
           VT+RDGR  QL+NV+IRG+KIRF+ILPDMLKNAP FK
Sbjct: 35  VTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPXFK 71



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +2

Query: 236 HVVTCETNTGEVYRGKLIEAEDNMNCQM 319
           H+VT ET TGEVYRGKL EAEDNMNCQ+
Sbjct: 3   HMVTLETVTGEVYRGKLSEAEDNMNCQL 30


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +3

Query: 324 SLTVTYRDGRVAQLENVYIRGSKIRFLILPDML 422
           ++++T ++    +L+ + IRG+ IR++ILPD L
Sbjct: 42  AVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPL 74


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 233 GHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVN 331
           G V++ ET  G VY+GKL   + N N  +T+ N
Sbjct: 7   GSVISTETKDGNVYQGKLTTYDTN-NGNLTMAN 38


>U53140-2|AAA96102.1|  134|Caenorhabditis elegans Hypothetical
           protein ZC266.1 protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 340 YVTVNESHLAIHIILSFN*FPSINFTGICF--TSHYMTFRL 224
           +V+V+ SH  IH+IL+     SI F   CF  TS+   F++
Sbjct: 10  FVSVSSSHNTIHVILTTPPAGSIFFLSACFPTTSNIAKFQM 50


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 206 PIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVNSHI 340
           P   L+   G  V C+   G  Y+G L+  +  MN Q+     +I
Sbjct: 9   PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYI 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,532
Number of Sequences: 27780
Number of extensions: 293438
Number of successful extensions: 738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)