Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B23
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    29   0.88 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   2.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   4.7  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   8.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   8.2  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 255 SPSQRTHRTSARLGRTAPSPVLQQLNAFAKSL 350
           SP+QR  R+S   G+ APSPVL+ L ++ + +
Sbjct: 253 SPTQR--RSSISNGKDAPSPVLKDLTSYTQEV 282


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 21   YREFLRF*HSSVFAVRFASPPHSVSRQYIDGRQVRSSLR 137
            Y + LR   S  F VR   P H+++RQ + GR+    +R
Sbjct: 1070 YYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIR 1108


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 173 RRTIAPWARAMQAKRTT---NLAAIDVLSRD*VRRRCEPDCKH 54
           R+TI+PW++ +   R T   N   +D +S+  +R+R   D  H
Sbjct: 288 RKTISPWSQCLLVARQTDVENSIRLDFISKK-LRKRLNGDVVH 329


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +2

Query: 542 KVSSNVQET--NEKLAPKIKAAYD 607
           +V  N++ET   EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 201 DVLEEVGSVASHHRSLGQSDAGEENYELGGHRCTVERLSAEE 76
           D+L + G+  S   + GQ    E++YE      ++   SAE+
Sbjct: 824 DILSQFGNDKSFGNAAGQDVIEEDDYETDQQDASISNKSAED 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,533
Number of Sequences: 5004
Number of extensions: 36705
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)