Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_B23
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 34 0.12
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 32 0.47
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 31 1.1
Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 29 4.4
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 29 4.4
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 28 7.7
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 491 LQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAAN 661
LQ A + VQ + K + SNV E + + I DD K ++ K ++E +
Sbjct: 306 LQKAEEEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITKELEKSAKSLEETTD 362
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 464 KNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKK 643
+N + +K VQ + QK+ KK + NVQ+ +K A K AKN Q++ KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQKMCKK 1320
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 491 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 619
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 491 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 619
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 491 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 619
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 491 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 619
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 491 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 619
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 491 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 619
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical
protein T10G3.2 protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 240 NSLTRSPSQRTHRTSARLGRTAPSPVLQQLNAFAKSLQXSA 362
NSL R P +R+H S G T+PS V+ N F +L A
Sbjct: 289 NSLRRRPVRRSHPISPSPG-TSPSSVVTIQNVFGMTLSGEA 328
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -2
Query: 438 ELLGRALDVLPRLFQSLLGLAVRVSERXXGDSWRRR*AVAAXDSEPSFQALLKSCASFDL 259
E L RA+ + P+ +LL L R + SW R A A SEP + ++ A F
Sbjct: 214 EYLDRAISIQPKE-DALLHLRGRWALSVANLSWFERKAAALLYSEPPTATVEEAIADFQA 272
Query: 258 VSELN 244
E+N
Sbjct: 273 AHEIN 277
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -2
Query: 438 ELLGRALDVLPRLFQSLLGLAVRVSERXXGDSWRRR*AVAAXDSEPSFQALLKSCASFDL 259
E L RA+ + P+ +LL L R + SW R A A SEP + ++ A F
Sbjct: 155 EYLDRAISIQPKE-DALLHLRGRWALSVANLSWFERKAAALLYSEPPTATVEEAIADFQA 213
Query: 258 VSELN 244
E+N
Sbjct: 214 AHEIN 218
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
C37C3.6a protein.
Length = 1558
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 91 TECGGDANRTANTEECQNL 35
T CGG+ANR A+ ++C++L
Sbjct: 1406 TGCGGNANRFASKDQCESL 1424
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
C37C3.6b protein.
Length = 2167
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 91 TECGGDANRTANTEECQNL 35
T CGG+ANR A+ ++C++L
Sbjct: 1406 TGCGGNANRFASKDQCESL 1424
>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical protein
B0464.2 protein.
Length = 1150
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 518 QESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ*ASI 682
++ K AKK S +E + P + K +E +K+QE +AKQ A I
Sbjct: 977 RKKDKAAKKASRKKRERRDSGGPDSNRRDEKKRKRKEERDRKLQEKLSAKQSAKI 1031
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 451 GGPCGAPRPCARCSASTVPKPP 386
GG CG P PC + + V PP
Sbjct: 65 GGGCGGPAPCGGAAPAYVAPPP 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,337,896
Number of Sequences: 27780
Number of extensions: 226947
Number of successful extensions: 1050
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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