Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B22
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    27   3.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   6.7  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    26   8.8  

>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 259 ESINKT-VKKDKDADNLL-----DQYEDYEPAEYQEVLYNEDRPWSQRLHMLCISGIQTS 420
           + +N T ++KD D    L     D  + ++ A  +  L NE   WS RLH+L    ++ S
Sbjct: 59  DRVNSTNLEKDIDLQESLLTNNPDLLQTFKEAVMKGHLSNEQF-WSTRLHLLRAHAVERS 117

Query: 421 QVQLPRNRYTKVR 459
           Q + P N  + ++
Sbjct: 118 QQRGPYNVLSTIK 130


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 253 FGESINKTVKKDKDADNLLDQYEDYEP 333
           FG S N T    KDA   LD Y++Y P
Sbjct: 379 FGNSYNVTRILTKDATFDLDAYQNYSP 405


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 434 GSCTWLVCIPEIQSICSLWDQGLSSLYKT 348
           GSC  LVC   +  I SL+D  +S L++T
Sbjct: 157 GSCCTLVCRYFMPVIRSLYDSKVSELHQT 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,113
Number of Sequences: 5004
Number of extensions: 36398
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)