Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B22
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    26   0.57 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.57 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.75 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   5.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   5.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   5.3  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 311 INMRITNPRNTKRFCTTRTGPGPRDCICSVSQGYRQAKCSFLEI--GTQKF 457
           I++ +     +K + T    PG RD I ++  G  QA C+ L +  GT +F
Sbjct: 16  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 66


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 311 INMRITNPRNTKRFCTTRTGPGPRDCICSVSQGYRQAKCSFLEI--GTQKF 457
           I++ +     +K + T    PG RD I ++  G  QA C+ L +  GT +F
Sbjct: 73  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 341 TKRFCTTRTGPGPRDCICSVSQGYRQAKCSFLEI--GTQKF 457
           +K + T    PG RD I ++  G  QA C+ L +  GT +F
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 50


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 311 INMRITNPRNTKRFCTTRTGPGPRDCICSVSQGYRQAKCSFL 436
           I++ +      K + T    PG RD I ++  G  QA C+ L
Sbjct: 73  IDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVL 114


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 SINKTVKKDKDADNLLDQYEDYEPAEYQE 348
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 SINKTVKKDKDADNLLDQYEDYEPAEYQE 348
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 SINKTVKKDKDADNLLDQYEDYEPAEYQE 348
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,669
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)