Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_B19
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 174 2e-44
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 71 3e-13
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 29 0.65
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 29 0.65
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 1.5
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 28 2.0
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 28 2.0
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.6
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 27 3.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.5
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 6.1
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.1
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 8.1
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 174 bits (423), Expect = 2e-44
Identities = 84/174 (48%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYD-YVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 308
V+FVLG PG+GKGTQC +++++D +VH+SAGD LREE+ RPGS+YG +I+E I++G+IV
Sbjct: 4 VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63
Query: 309 PVEVTCSLLHKAMQK---SGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSRE 479
P+E+T SLL M++ G ++FLIDGFPR D +G+E+ + F L+F C +E
Sbjct: 64 PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAK---FALYFRCGQE 120
Query: 480 ICTERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 641
+R + RG SGRSDDN+ES+KKRF TY +MP++ Y + I+AE
Sbjct: 121 TMLKRLIHRGKT-SGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAE 173
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 70.5 bits (165), Expect = 3e-13
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 29/197 (14%)
Frame = +3
Query: 135 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVPV 314
+ ++G PG+GKGTQ I K+Y HL+ GD+LR + R +E G+ ++ + G +V
Sbjct: 6 LILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQ-TELGKEAKKIMDQGGLVSD 64
Query: 315 EVTCSLLHKAMQKSG--KERFLIDGFPRNQDNMDGWERVMSD-KTKLLFVLFFECSREIC 485
++ ++ + + K F++DGFPR + ++ + K L VL + E+
Sbjct: 65 DIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELL 124
Query: 486 TERCLRRGA-AGSG-------------------------RSDDNVESLKKRFNTYLNDTM 587
R R GSG RSDDN ++L+KR TY T
Sbjct: 125 VRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHEQTT 184
Query: 588 PIINYYDKLGLVRRINA 638
P++ +Y K G ++A
Sbjct: 185 PVVEFYKKKGKWAAVDA 201
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 29.5 bits (63), Expect = 0.65
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 126 PQVVFVLGAPGSGKGTQCSMISKEY 200
P V+ ++G GSGK T CS ++ Y
Sbjct: 101 PSVIMMVGLQGSGKTTTCSKLALHY 125
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 29.5 bits (63), Expect = 0.65
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 9/151 (5%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYDYV-----HLSAGDLLREERQRPGSEYGEMI----EE 284
++ ++G P +GK S +S+ Y+++ S GD REE S + EE
Sbjct: 145 IIILVGIPATGKSYIGSKLSRYYNWLKYNCRFFSVGDKRREEGASTYSMSADFFDIKNEE 204
Query: 285 KIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFF 464
+ E V +E LLH + ++G L ++ ++R+ + + L
Sbjct: 205 TFKFRENVALETLEDLLHWMIHENGVIGILDATNSTHERRKHLYDRISKEADIGIMFLES 264
Query: 465 ECSREICTERCLRRGAAGSGRSDDNVESLKK 557
C+ +I E ++ G + ES K
Sbjct: 265 LCTDDILFEENIKLKIKGPDYEGYDTESALK 295
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 135 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLRE 239
+ + G PG+GK T +++ + ++ GD+++E
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELENICIGDVVKE 45
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYD 203
++ + G PGSGK T C++++K ++
Sbjct: 31 LIGLAGGPGSGKSTLCAILAKAWN 54
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +3
Query: 225 DLLREERQRPGSEYGEM---IEEKIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRN 395
++LR++RQ+ SE ++ ++EK + P ++ + ++ + D F R
Sbjct: 100 EILRQQRQKRKSELTQLSQKVKEKFKKMRKKPARRIVTIANDE-EEEDDQTMDEDAFERK 158
Query: 396 QDNMDGWERVMSDKTKLLFVLFFECSREI 482
+ ER ++DKT L F E S ++
Sbjct: 159 SMQGELKERNLTDKTSTLSTSFGETSPDV 187
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 114 NKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDL 230
N+ V V+G GSGK T +S++ + ++ DL
Sbjct: 10 NQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 192 KEYDYVHLSAGDLLREERQRPGSEYGEMI 278
KE DY SA + + ++ PGSE GE++
Sbjct: 56 KEIDYAVKSAKEAFKTWKKVPGSEKGELL 84
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 126 PQVVFVLGAPGSGKGTQCSMISKEYDYVHLS 218
P +V V+G PG+GK T + + Y +S
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTIS 104
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -1
Query: 312 PELSHRYESFLQSFLRILNQVSGVLLGVNRLHSNGRNHILW 190
P + ++ FLQ +L ++ V+ G N + NH +W
Sbjct: 238 PNVGRKFRKFLQRYLNFSDRPIKVIAGKNVVGEFSGNHGIW 278
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 72 LMLNSVLRQSSRYINKMVPQVVFVLGAPG 158
L+LN +L +S +NK++ + V+ PG
Sbjct: 1280 LVLNVILTESELEVNKVIEEFQLVINQPG 1308
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 558 FSLSSLRYRRFVHCLQRRVSSISRYISHAN 469
F+ LRY+ + +QRR SS+ +Y H++
Sbjct: 26 FNKFFLRYKTEISKIQRRTSSLIQYEEHSS 55
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 152 SWLWQRYTVLNDFQRI*LRPFECRRFTPRRTPETWFRIRRND 277
S +WQR L +F+ + ++P+E + + + WF I D
Sbjct: 234 SVVWQRQRTLTEFRTMSIKPYEIQVYRNKH----WFPISTED 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,931
Number of Sequences: 5004
Number of extensions: 62088
Number of successful extensions: 199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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