Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_B19
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 215 5e-56
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 211 4e-55
Z50045-3|CAA90364.1| 210|Caenorhabditis elegans Hypothetical pr... 138 5e-33
AF304123-1|AAG50236.1| 210|Caenorhabditis elegans adenylate kin... 138 5e-33
L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical p... 85 5e-17
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 84 1e-16
Z48585-2|CAA88479.1| 222|Caenorhabditis elegans Hypothetical pr... 60 3e-09
Z68342-6|CAD89740.1| 418|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotid... 31 1.1
Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical pr... 29 3.3
U21317-8|AAA62528.1| 267|Caenorhabditis elegans Hypothetical pr... 29 3.3
U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p... 29 5.7
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein. 29 5.7
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 28 7.6
AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain famil... 28 7.6
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 215 bits (524), Expect = 5e-56
Identities = 102/171 (59%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 311
VVFVLG PGSGKGT C+ I + +YVHLSAGDLLR ERQR GSE+G +IE I+NG IVP
Sbjct: 4 VVFVLGPPGSGKGTICAKIQENLNYVHLSAGDLLRAERQREGSEFGALIESHIKNGSIVP 63
Query: 312 VEVTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICT 488
VE+TCSLL AM+ G + FL+DGFPRN+DN+ GW + M K + FVLF C IC
Sbjct: 64 VEITCSLLENAMKACGDAKGFLVDGFPRNEDNLQGWNKQMDGKALVQFVLFLSCPVSICI 123
Query: 489 ERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 641
ERCL R G GR+DDN ESLKKR TY T PII +++K GLVR + +E
Sbjct: 124 ERCLNR---GQGRTDDNEESLKKRVETYNQQTFPIIEHFEKSGLVREVKSE 171
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 211 bits (516), Expect = 4e-55
Identities = 101/171 (59%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 311
VVFVLG PGSGKGT C+ I + YVHLSAGDLLR ER+R GSEYG +IE I+NG IVP
Sbjct: 4 VVFVLGPPGSGKGTICTQIHENLGYVHLSAGDLLRAERERAGSEYGALIEGHIKNGSIVP 63
Query: 312 VEVTCSLLHKAMQKS-GKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICT 488
VE+TC+LL AM S FLIDGFPRN+DN GW + M K FVLF C ++C
Sbjct: 64 VEITCALLENAMIASKDANGFLIDGFPRNEDNWSGWNKQMGGKVNEQFVLFLSCPVDVCI 123
Query: 489 ERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 641
+RCL R G GR+DDNVESLKKR TY T PII +++K+G+VR +N+E
Sbjct: 124 DRCLHR---GQGRTDDNVESLKKRVETYNQSTFPIIEHFEKVGMVREVNSE 171
>Z50045-3|CAA90364.1| 210|Caenorhabditis elegans Hypothetical
protein F38B2.4 protein.
Length = 210
Score = 138 bits (334), Expect = 5e-33
Identities = 73/173 (42%), Positives = 108/173 (62%), Gaps = 3/173 (1%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 311
+ F++G PGSGKGTQC I +Y HLS+GDLLR+E + GS G + + +G +VP
Sbjct: 22 IFFIVGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDE-VKSGSPRGAQLTAIMESGALVP 80
Query: 312 VEVTCSLLHKAMQKS---GKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREI 482
+EV L+ +AM K+ G + FLIDG+PR +E S+ + VLFF+ + E
Sbjct: 81 LEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFE---SEIQEAKLVLFFDVAEET 137
Query: 483 CTERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 641
+R L R A SGR+DDN +++KKR +T++ T P+++YY+ G + RINAE
Sbjct: 138 LVKRLLHR-AQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINAE 189
>AF304123-1|AAG50236.1| 210|Caenorhabditis elegans adenylate kinase
1 protein.
Length = 210
Score = 138 bits (334), Expect = 5e-33
Identities = 73/173 (42%), Positives = 108/173 (62%), Gaps = 3/173 (1%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 311
+ F++G PGSGKGTQC I +Y HLS+GDLLR+E + GS G + + +G +VP
Sbjct: 22 IFFIVGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDE-VKSGSPRGAQLTAIMESGALVP 80
Query: 312 VEVTCSLLHKAMQKS---GKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREI 482
+EV L+ +AM K+ G + FLIDG+PR +E S+ + VLFF+ + E
Sbjct: 81 LEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFE---SEIQEAKLVLFFDVAEET 137
Query: 483 CTERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 641
+R L R A SGR+DDN +++KKR +T++ T P+++YY+ G + RINAE
Sbjct: 138 LVKRLLHR-AQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINAE 189
>L23651-13|AAA27957.3| 251|Caenorhabditis elegans Hypothetical
protein C29E4.8 protein.
Length = 251
Score = 85.4 bits (202), Expect = 5e-17
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 28/193 (14%)
Frame = +3
Query: 144 LGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVPVEVT 323
+G PGSGKGTQ +++Y HL+ GDLLR E GSE+G+ ++ + G++V EV
Sbjct: 32 IGPPGSGKGTQAPAFAQKYFSCHLATGDLLRAE-VASGSEFGKELKATMDAGKLVSDEVV 90
Query: 324 CSLLHKAMQK-SGKERFLIDGFPRNQDNMDGWERVMS-DKTKLLFVLFFECSREICTERC 497
C L+ + ++K K F++DGFPR + + ++ KT L V+ F + ++ R
Sbjct: 91 CKLIEQKLEKPECKYGFILDGFPRTSGQAEKLDEILERRKTPLDTVVEFNIADDLLVRRI 150
Query: 498 L-RRGAAGSGR-------------------------SDDNVESLKKRFNTYLNDTMPIIN 599
R SGR SDDN E+L+KR Y T+P+++
Sbjct: 151 TGRLFHIASGRSYHLEFKPPKVPMKDDLTGEPLIRRSDDNEETLRKRLVQYHQMTVPLVD 210
Query: 600 YYDKLGLVRRINA 638
YY K G+ ++A
Sbjct: 211 YYKKHGVHVAVDA 223
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical protein
F13E6.2 protein.
Length = 729
Score = 84.2 bits (199), Expect = 1e-16
Identities = 46/174 (26%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYD-YVHLSAGDLLREE-RQRPGSEYGEMIEEKIRNGEI 305
V+ VLGAPGS K I+++YD + LS GD+LR++ E + + +K+ NG+
Sbjct: 515 VILVLGAPGSQKNDISRRIAQKYDGFTMLSMGDILRKKINNEKNDEMWDKVSKKMNNGDP 574
Query: 306 VPVEVTCSLLHKAMQKSGKER--FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSRE 479
+P ++ ++L++ + G ++I+G+P++ D + E + +T L ++ +C+ +
Sbjct: 575 IPTKMCRTVLYEELHSRGTSNWGYVIEGYPKSPDQLVDLEHSLQ-RTDLAILI--DCTEQ 631
Query: 480 ICTERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 641
C E +R RSDD+ ++++ R + +T+P++ D G +R ++ +
Sbjct: 632 FCLEVINKRNRENK-RSDDDSDAVRSRMEYFKKNTLPMLKTLDDKGKLRVVDGD 684
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 84.2 bits (199), Expect = 1e-16
Identities = 46/174 (26%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Frame = +3
Query: 132 VVFVLGAPGSGKGTQCSMISKEYD-YVHLSAGDLLREE-RQRPGSEYGEMIEEKIRNGEI 305
V+ VLGAPGS K I+++YD + LS GD+LR++ E + + +K+ NG+
Sbjct: 515 VILVLGAPGSQKNDISRRIAQKYDGFTMLSMGDILRKKINNEKNDEMWDKVSKKMNNGDP 574
Query: 306 VPVEVTCSLLHKAMQKSGKER--FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSRE 479
+P ++ ++L++ + G ++I+G+P++ D + E + +T L ++ +C+ +
Sbjct: 575 IPTKMCRTVLYEELHSRGTSNWGYVIEGYPKSPDQLVDLEHSLQ-RTDLAILI--DCTEQ 631
Query: 480 ICTERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 641
C E +R RSDD+ ++++ R + +T+P++ D G +R ++ +
Sbjct: 632 FCLEVINKRNRENK-RSDDDSDAVRSRMEYFKKNTLPMLKTLDDKGKLRVVDGD 684
>Z48585-2|CAA88479.1| 222|Caenorhabditis elegans Hypothetical
protein ZK673.2 protein.
Length = 222
Score = 59.7 bits (138), Expect = 3e-09
Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Frame = +3
Query: 135 VFVLGAPGSGKGTQCSMISKEYD---YVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEI 305
V + GA GSGKGT M+ +E++ + + +AGD +R+ R G+E+G + + GE
Sbjct: 4 VLLSGAAGSGKGTIARMLVREFEPLGFNYFAAGDFIRDHIAR-GTEFGVRAQSFLNKGEH 62
Query: 306 VPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREIC 485
VP + + M K+G R ++DG+PRN + +++ ++ L ++ + R++
Sbjct: 63 VPDSILNGAILAEMLKAG-PRVVLDGYPRNMSQL----KMVEEQAPLNLIVELKVPRKVL 117
Query: 486 TER 494
+R
Sbjct: 118 IDR 120
>Z68342-6|CAD89740.1| 418|Caenorhabditis elegans Hypothetical
protein F38E11.6b protein.
Length = 418
Score = 36.3 bits (80), Expect = 0.029
Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Frame = +3
Query: 108 YINKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLRE---ERQRPGSEYGEMI 278
++ K +VF+ G P S KG+ ++ +++ +S D++ + R + I
Sbjct: 36 HLQKNPIAIVFIFGGPASQKGSIIEELTSSFNFTSISVEDIVFQYFPSRLSGSGTQIKDI 95
Query: 279 EEKIRNGE-IVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWE-RVMS-----DK 437
++ +RN E ++ ++ ++ ++ + +RF++D P + E R S ++
Sbjct: 96 QDALRNDEGMLSIDWVLEMISSRIKMTMNQRFVVDIVPAVSSILKAEEYRARSHDRQLNQ 155
Query: 438 TKLLFVLFFECSREICTERCLRR-GAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKL 614
++ + F + E+ L + +G+ +D+ KR N LN M + D+
Sbjct: 156 FEMKHPISFAIDVTVKDEQALTKLNGEANGKDEDS-----KRINPELNQMMRGADDIDRG 210
Query: 615 GLVRRINAEXRT 650
L +RI AE T
Sbjct: 211 KLEKRI-AEYHT 221
>Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical
protein F38E11.6a protein.
Length = 416
Score = 36.3 bits (80), Expect = 0.029
Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Frame = +3
Query: 108 YINKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLRE---ERQRPGSEYGEMI 278
++ K +VF+ G P S KG+ ++ +++ +S D++ + R + I
Sbjct: 36 HLQKNPIAIVFIFGGPASQKGSIIEELTSSFNFTSISVEDIVFQYFPSRLSGSGTQIKDI 95
Query: 279 EEKIRNGE-IVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWE-RVMS-----DK 437
++ +RN E ++ ++ ++ ++ + +RF++D P + E R S ++
Sbjct: 96 QDALRNDEGMLSIDWVLEMISSRIKMTMNQRFVVDIVPAVSSILKAEEYRARSHDRQLNQ 155
Query: 438 TKLLFVLFFECSREICTERCLRR-GAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKL 614
++ + F + E+ L + +G+ +D+ KR N LN M + D+
Sbjct: 156 FEMKHPISFAIDVTVKDEQALTKLNGEANGKDEDS-----KRINPELNQMMRGADDIDRG 210
Query: 615 GLVRRINAEXRT 650
L +RI AE T
Sbjct: 211 KLEKRI-AEYHT 221
>Z54271-5|CAA91035.2| 407|Caenorhabditis elegans Hypothetical
protein F21D5.5 protein.
Length = 407
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 129 QVVFVLGAPGSGKGTQCSMISKEYDY 206
+++ ++G PGSGK T M+ ++DY
Sbjct: 251 EIILMVGFPGSGKSTFAKMLGHQHDY 276
>AF292046-1|AAG41142.1| 407|Caenorhabditis elegans polynucleotide
kinase 3' phosphataseprotein.
Length = 407
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 129 QVVFVLGAPGSGKGTQCSMISKEYDY 206
+++ ++G PGSGK T M+ ++DY
Sbjct: 251 EIILMVGFPGSGKSTFAKMLGHQHDY 276
>Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical
protein T08D10.2 protein.
Length = 737
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3
Query: 111 INKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKI 290
+N M + V V+GA +G +++ +D + A L + S++GE+IE
Sbjct: 169 VNNMEKKFVVVIGAGAAGIAAATQLLTFGFDVAVVEASGLTGGRVRSLISKHGELIETGC 228
Query: 291 RNGEIVPVEVTCSLLHK 341
+ + V +LLH+
Sbjct: 229 DSLRNLDESVITTLLHQ 245
>U21317-8|AAA62528.1| 267|Caenorhabditis elegans Hypothetical
protein B0495.9 protein.
Length = 267
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Frame = +3
Query: 135 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEI--- 305
++VL G T M+S+ + SA L E+ RPG I++ +++GE+
Sbjct: 101 IYVLAVAGLSFVTSFIMLSQMFTGDRNSADGLTNEDFTRPGIPMKTFIDKYLKHGEVQRI 160
Query: 306 --VPVEV-TCSLLHKAMQKSGK---ERFLIDGFPRN 395
VP ++LH+ GK E +I +P+N
Sbjct: 161 VFVPNNSRAIAILHRGAVIDGKAASEASVIVEYPQN 196
>U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical
protein C10G11.9 protein.
Length = 203
Score = 29.1 bits (62), Expect = 4.3
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = -3
Query: 514 AAPRLKHLSVHISREHSKNKTKSSLVLSDMTRSQPSILS*LRGKPSMRKRSLPDFCMALC 335
+A R S + R S+ + S+ S T PS++ + G PS R+R P +
Sbjct: 40 SASRGARQSRSVGRPMSRRNSVRSI--STHTAKSPSLVLVISGSPSPRRRR-PSTRRSSS 96
Query: 334 NKEQVTSTGTISPLRIFSSIISPYSEPGLWRSS-RSKS 224
+ V S S R SS S Y G RSS RS+S
Sbjct: 97 RRSVVRSVSRGSKSRRSSSRGSVYGRTGRSRSSKRSRS 134
>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
protein F43G9.6 protein.
Length = 2034
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +3
Query: 186 ISKEYDYVHLSAGDLLREERQRPGSEYGEMIEE-KIRNGEIVPV--EVTCSLLHKAMQKS 356
I K Y Y + + + + G E G IE+ E++ V ++L+ QK+
Sbjct: 1506 ILKSYCYKMMLSVPKIESRQTERGEEKGITIEKITFWFSEVLHVFENEEIAMLNSQRQKA 1565
Query: 357 GKERFLIDGFPRNQDNMDG-WERVMSDKTK 443
GKE F +N+D DG W+ ++ K
Sbjct: 1566 GKENFSDGSDQQNEDVSDGSWDEEDLEREK 1595
>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
Length = 2034
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +3
Query: 186 ISKEYDYVHLSAGDLLREERQRPGSEYGEMIEE-KIRNGEIVPV--EVTCSLLHKAMQKS 356
I K Y Y + + + + G E G IE+ E++ V ++L+ QK+
Sbjct: 1506 ILKSYCYKMMLSVPKIESRQTERGEEKGITIEKITFWFSEVLHVFENEEIAMLNSQRQKA 1565
Query: 357 GKERFLIDGFPRNQDNMDG-WERVMSDKTK 443
GKE F +N+D DG W+ ++ K
Sbjct: 1566 GKENFSDGSDQQNEDVSDGSWDEEDLEREK 1595
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 28.3 bits (60), Expect = 7.6
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = -3
Query: 514 AAPRLKHLSVHISREHSKNKTKSSLVLSDMTRSQPSILS*LRGKPSMRKRSLPDFCMALC 335
+A R S + R S+ + S+ S T PS++ + G PS R+R P +
Sbjct: 40 SASRGARQSRSVGRPMSRRNSVRSI--STHTAKSPSLVLVISGSPSPRRRR-PSTRRSSS 96
Query: 334 NKEQVTSTGTISPLRIFSSIISPYSEPGLWRSS-RSKS 224
+ V S S R SS S Y G RSS RS+S
Sbjct: 97 RRSVVRSVSRGSKGRRSSSRGSVYGRTGRSRSSKRSRS 134
>AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain family
protein 6 protein.
Length = 790
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 489 ERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEXR 647
E C R+G AG +++N ++ TY T P N DK ++ + + R
Sbjct: 483 EWCSRKGTAGGCSNNENTFCTNPQYETYFRATSPSSN--DKCTVIAAVFQKYR 533
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,677
Number of Sequences: 27780
Number of extensions: 347764
Number of successful extensions: 1075
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -