Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B18
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   0.89 
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   2.7  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 837 KGHRX-PKGEGGQDXVSGRVGTGGARGSFQGETPGIF 730
           KG R  P G GG+    G  G GG+RG F G + G F
Sbjct: 128 KGARNGPAGRGGRGGFRG--GRGGSRGGFGGNSRGGF 162


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 831 HRXPKGEGGQDXVSGRVGTGGARGSFQGETPGIF-IVXSGFATXXLSVDFCDARQGGRSL 655
           H    G GG++  S RVG+ G+ GS   +   +F  V S  AT   S +F    +  +S+
Sbjct: 36  HNQEDGAGGRNENSERVGS-GSPGSVSMQVLSLFSAVNSALATLEKSEEFPSVVKDEQSI 94

Query: 654 WXNASNAA 631
           +   + A+
Sbjct: 95  FPAVAKAS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,951
Number of Sequences: 5004
Number of extensions: 26289
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)