Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B18
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     32   0.70 
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    29   6.6  
06_01_0500 + 3584743-3585516                                           28   8.7  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 758 VSRGKRLVSL*SXRGSPPXX*ASIFVMLVRGGGAYGKTPAT 636
           +SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 24  LSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 882 KAPTTPEXDXTGEVWKGHRXPKGEGGQDXVSGRVGTGGARG 760
           ++P     D + E WK      G+GG D   GR G GG  G
Sbjct: 98  RSPPKVRRDGSVEFWKNDGG--GDGGSDGGGGRGGGGGGGG 136


>06_01_0500 + 3584743-3585516
          Length = 257

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 609 KRPGTVKRPRCWRFXIGSAPPDEHHKNRRSXXRWRTP 719
           K+PG+ K P      I S PPD H + R +  R   P
Sbjct: 5   KKPGSKKMPTPAVMRIRSPPPDPHRRARAAPRRCIPP 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,706
Number of Sequences: 37544
Number of extensions: 260367
Number of successful extensions: 1103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)