Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B18
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protei...    29   5.9  
CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical ...    29   5.9  
Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical
           protein M199.5 protein.
          Length = 660

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 837 KGHRXPKGEGGQDXVSGRVGTGGARGSFQGE 745
           KG   PKG+ G D   G  GT GA+G  +GE
Sbjct: 348 KGLDGPKGDKGADGAKGANGTPGAKGD-KGE 377


>Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical
           protein ZK265.2 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -2

Query: 882 KAPTTPEXDXTGEVWKGHRXPKGEGGQDXVSGRVGTGGARGSFQGE-TPGI 733
           K P  P        + GH  P G+ G D  +G+ G  G  G    E TPG+
Sbjct: 148 KCPAGPPGPPGPNGFPGHPGPDGDFGVDGTNGKDGEPGPDGPEGDEGTPGL 198


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -2

Query: 876 PTTPEXDXTGEVWKGHRXPKGEGGQDXVSGRVGTGGARGSFQGETPGI 733
           P  P  D  G    G   P+G  GQD   G  G  G  GS  G  PG+
Sbjct: 228 PGGPPGDAGGAGSDGAPGPQGPPGQDGTPGNAGPDGQPGSPGG--PGL 273


>U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protein
           164 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 840 WKGHRXPKGEGGQDXVSGRVGTGGARG 760
           +KG R P+GE G     G  G  GA G
Sbjct: 160 YKGKRGPRGEKGDKGAPGNAGRDGAPG 186


>CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical
           protein C52D10.13 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 834 GHRXPKGEGGQDXVSGRVGTGGARG 760
           G + PKGE GQD   G+ G  G +G
Sbjct: 213 GEQGPKGEAGQDGRPGQPGRQGPQG 237


>Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical
           protein F57B7.3 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 834 GHRXPKGEGGQDXVSGRVGTGGARGSFQGE--TPG 736
           G   P G+ GQD  SG+ G  G  G  QG+  TPG
Sbjct: 150 GAPGPSGQPGQDGASGQPGAPGVAGP-QGDAGTPG 183


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 816 GEGGQDXVSGRVGTGGARGSFQGETPGIF 730
           G GG    + R G GG RG  +G +PG F
Sbjct: 17  GRGGGSGFTPRGGGGGFRGGDRGRSPGGF 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,291,982
Number of Sequences: 27780
Number of extensions: 174367
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)