Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B16
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 509 PPPPXXGGXXFXGPPPXPP 565
           PPPP   G    GPPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 509 PPPPXXGGXXFXGPPPXPP 565
           PPPP   G     PPP PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 509 PPPPXXGGXXFXGPPPXPP 565
           PPPP  G      PPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 GXGXGPPPGXGGY-XXPXYGXVXXAXGPPPL*GGGXXXFFWXNGGXLXFXGPPXG 416
           G   GPPPG GG+     +G      G     GGG   F    GG   F G P G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF---EGGPGGFGGGPGG 246


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 509 PPPPXXGGXXFXGPPPXPP 565
           PPPP  G      PPP PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,322
Number of Sequences: 5004
Number of extensions: 29800
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)