Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B15
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   2.8  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   4.9  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   6.4  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 561 NVSDCRIIYIDNGCWLCFQI 502
           NVSDC++ +  NG +LC ++
Sbjct: 405 NVSDCKLYWQSNGDYLCVKV 424


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +3

Query: 666 YSNVHNTFH---IYKWKNFI*YLYSV 734
           Y+NV+N+FH   +++W  F   L+++
Sbjct: 528 YTNVYNSFHDRRVWRWSTFFSILFAI 553


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 457 LWKIKSTVRNHTFPFHIDSKT-NNYRYRCSILKSQSLGRR--RYIP 329
           ++KI+ T R      H   K  N+Y Y CS L  +++G +  R++P
Sbjct: 794 IFKIEGTQRK-ILGIHSRRKLKNSYEYECSFLVGENIGMKSERWVP 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,594
Number of Sequences: 5004
Number of extensions: 54448
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)