Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B15
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   5.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   5.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   5.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -2

Query: 824 ILILNKNYEYKVVLVY-LNIKYSFDLD----ICFSNRV*VLNEVFPFVNMKCIMNITIW 663
           +L  N +  Y+V L+    +KY+ D+       + +   +  E FPF    CIM    W
Sbjct: 121 VLYNNADGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSW 179


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 442 STVRNHTFPFHIDSKTNNYRYRCS 371
           S V       H+ S +N Y+YRC+
Sbjct: 25  SCVNKSMLNSHLKSHSNVYQYRCA 48


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +1

Query: 604 VYSMLIY*ITRDDDEFIQNYHIVMFIIHFIFTNGKTSFSTYTLF-----EKQISKSNEYL 768
           +YS+    ITR D +FIQ   +     +F F +     + + L       K   K  EY+
Sbjct: 141 IYSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEVLQKANHALIFGKLDTKTSGKYKEYI 200

Query: 769 I 771
           I
Sbjct: 201 I 201


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +1

Query: 604 VYSMLIY*ITRDDDEFIQNYHIVMFIIHFIFTNGKTSFSTYTLF-----EKQISKSNEYL 768
           +YS+    ITR D +FIQ   +     +F F +     + + L       K   K  EY+
Sbjct: 141 IYSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEVLQKANHALIFGKLDTKTSGKYKEYI 200

Query: 769 I 771
           I
Sbjct: 201 I 201


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 409 IDSKTNNYRYRCSILKSQSLGRRRYIPYRVSVLRKILLNITP*TLREYXPMP 254
           I S +NNY Y  +  K       R + Y ++ + +I + + P     + P P
Sbjct: 82  ISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPV-PIYCGNFPPRP 132


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 415 FHIDSKTNNYRYRCSILKS 359
           FH+D  TNN ++   ++K+
Sbjct: 206 FHMDGYTNNSKWDFKVIKA 224


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 298 IGFFLERKPCTVCSVVFLVTVILICYS 378
           IGF    K  T+   V ++ V  IC++
Sbjct: 248 IGFLTRAKIRTLKMTVIIIAVFFICWT 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,365
Number of Sequences: 438
Number of extensions: 3821
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)