Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B14
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    35   0.019
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.7  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   6.5  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 457 TLNRTNFRNHNCFFLTHNTSYCFE---LGLSYHNLILIFLYINDLINLE 320
           +L   N  N+  FFL H+T Y      L LSY+N +   L I +L  LE
Sbjct: 503 SLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLE 551


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 421 FFLTHNTSYCFELG--LSYHNLILIFLYINDLINLEYCLIQSNG 296
           F+L     Y   L   L Y +L++ F   NDL+NL +     NG
Sbjct: 823 FYLVDTEQYASLLHDFLEYQSLLISFFEANDLLNLLWIFEAQNG 866


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 195 LALPVVGNR*ANRRSRIHSVTCTGTKLVTSHSTNPLL*MRQYSKFIKSFIYKN 353
           L L + GN  A   +  H V C    ++TSH+TNP+  + +  K I +  + N
Sbjct: 185 LKLLLSGNPVAEHETFSHPVGCL--IVITSHNTNPMATVMRLFKEINNAPFPN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,012
Number of Sequences: 5004
Number of extensions: 41028
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)