Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_B13
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 29 4.4
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 29 4.4
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 29 4.4
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 32.3 bits (70), Expect = 0.47
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 411 VDGTETDLGRNGVCESRRSSCCYPELDEQDLP 506
+DG+ D+ +G C +R+S+C DE+ +P
Sbjct: 288 IDGSVIDIAHSGACRARKSTCITCPKDEKKIP 319
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 356 TAASEECNDESDAPNNHTGHRRHSEAGL*QHSLYVSEL*MNRQSEAQQSETCQRK 192
+++ E+ +DE++A N+ R + G Q SL ++ L +R+ +A+++E C R+
Sbjct: 1047 SSSFEDDDDENNAHNHDQKRTRKTSQGSAQ-SLNITSLFHSRRRKAKKNEKCDRE 1100
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 356 TAASEECNDESDAPNNHTGHRRHSEAGL*QHSLYVSEL*MNRQSEAQQSETCQRK 192
+++ E+ +DE++A N+ R + G Q SL ++ L +R+ +A+++E C R+
Sbjct: 1087 SSSFEDDDDENNAHNHDQKRTRKTSQGSAQ-SLNITSLFHSRRRKAKKNEKCDRE 1140
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 356 TAASEECNDESDAPNNHTGHRRHSEAGL*QHSLYVSEL*MNRQSEAQQSETCQRK 192
+++ E+ +DE++A N+ R + G Q SL ++ L +R+ +A+++E C R+
Sbjct: 1148 SSSFEDDDDENNAHNHDQKRTRKTSQGSAQ-SLNITSLFHSRRRKAKKNEKCDRE 1201
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 356 TAASEECNDESDAPNNHTGHRRHSEAGL*QHSLYVSEL*MNRQSEAQQSETCQRK 192
+++ E+ +DE++A N+ R + G Q SL ++ L +R+ +A+++E C R+
Sbjct: 1047 SSSFEDDDDENNAHNHDQKRTRKTSQGSAQ-SLNITSLFHSRRRKAKKNEKCDRE 1100
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 356 TAASEECNDESDAPNNHTGHRRHSEAGL*QHSLYVSEL*MNRQSEAQQSETCQRK 192
+++ E+ +DE++A N+ R + G Q SL ++ L +R+ +A+++E C R+
Sbjct: 1087 SSSFEDDDDENNAHNHDQKRTRKTSQGSAQ-SLNITSLFHSRRRKAKKNEKCDRE 1140
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 356 TAASEECNDESDAPNNHTGHRRHSEAGL*QHSLYVSEL*MNRQSEAQQSETCQRK 192
+++ E+ +DE++A N+ R + G Q SL ++ L +R+ +A+++E C R+
Sbjct: 1148 SSSFEDDDDENNAHNHDQKRTRKTSQGSAQ-SLNITSLFHSRRRKAKKNEKCDRE 1201
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 356 TAASEECNDESDAPNNHTGHRRHSEAGL*QHSLYVSEL*MNRQSEAQQSETCQRK 192
+++ E+ +DE++A N+ R + G Q SL ++ L +R+ +A+++E C R+
Sbjct: 1087 SSSFEDDDDENNAHNHDQKRTRKTSQGSAQ-SLNITSLFHSRRRKAKKNEKCDRE 1140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,464,967
Number of Sequences: 27780
Number of extensions: 358552
Number of successful extensions: 999
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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