Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B13
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    31   0.011
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 31.5 bits (68), Expect = 0.011
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +1

Query: 370 SNCMLVTYAIFMLVLMALKLTLGVMVFV------NLDGVVAAIPNWMNKTF--QQDQDTF 525
           S+CM +T+A F+L ++ +++ + V  F+      N   +        N  F   + +D  
Sbjct: 77  SHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKDFI 136

Query: 526 HVIEHRFSCCG 558
             I+    CCG
Sbjct: 137 DFIQKNLQCCG 147


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +2

Query: 272 RDQLQSGAGGLYDCWGHRFHHCILRMLRCHQG 367
           RD  +   GG+Y    H  HH     +  H G
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAILGHSG 294


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 563 RVRARTYPWTLPITCCSTTPXYGNQRVRRLHR 658
           +V  RT+    P TC      +G   V +LH+
Sbjct: 220 KVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQ 251


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 755 QSEDDGHQFNGGDHDGDRAD 696
           +  DDG   N GD    RAD
Sbjct: 194 RDSDDGSDGNDGDESSCRAD 213


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 448 TPLRPRSVSVPSTP 407
           TPL+PR  S+ S+P
Sbjct: 892 TPLQPRFYSISSSP 905


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,613
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)