Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B10
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    53   5e-08
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.70 
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    28   1.6  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    27   4.9  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.5  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   6.5  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   8.6  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     26   8.6  

>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
 Frame = +1

Query: 169 AWRKHCDIKDVENFLEDQRLEE-RLGKFETKPDSEIFIIDTGGDG--IKTEDKDIKPISL 339
           AWRK+ D++D+E+ LE  R EE + G  E KP+  +F+IDT GD    K   K IKP+ +
Sbjct: 22  AWRKNIDLEDIESGLEQTRDEEIKGGNVEHKPNDALFVIDTLGDDRIAKRSRKKIKPLKV 81

Query: 340 KKLRRSK 360
            ++  +K
Sbjct: 82  DQILENK 88


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 524 IEDARRNRKMALQKKRRAKQVRQNFNLDLWGXDLPDSRTIPSTLCDEFIP 673
           +ED  RN+   L +K+  K      NLD +  D  +    PS   +++ P
Sbjct: 730 LEDVSRNKSQLLAEKKHLKSQLMVANLDTYSLDCYEIHEFPSEWENDYAP 779


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
 Frame = +2

Query: 434 NTVKPVGSKPTAFSKLTDKRXYEKGIYQKKIEDARRNRKMALQKKRRAKQVRQNFNLDL- 610
           +T+ P  S PT    L         ++Q+ +    RN + + +   ++  +R +  +D+ 
Sbjct: 8   STISPTFSTPTKKRNLVFPNSPITPLHQQAL--LGRNGRSSKRCSPKSSFIRNSPKIDVV 65

Query: 611 ---WGXDL---PDSRTIPSTLCDEFIPPQAQLHMCYQNSVFGQKPPLXPELLVDSC 760
              W   L   P +++ P++  D FIP +      + NS+    P    E + ++C
Sbjct: 66  NTDWSIPLCGSPRNKSRPASRSDRFIPSRPNTANAFVNSISSDVPFDYSESVAEAC 121


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/47 (25%), Positives = 30/47 (63%)
 Frame = +2

Query: 455 SKPTAFSKLTDKRXYEKGIYQKKIEDARRNRKMALQKKRRAKQVRQN 595
           SK +   +L ++   ++ I Q+K EDA+  +++ ++KK++ ++  +N
Sbjct: 71  SKKSHLQELYERSEEKRRIQQEK-EDAKVQKRLEIEKKQKDREQTRN 116


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 644 PSTLCDEFIPPQAQLHMCYQNSVFGQKPP 730
           PS+L  +  PP  + H    NS+F  K P
Sbjct: 347 PSSLSRKLAPPFLRTHKAKSNSLFSMKRP 375


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 413 QDPNTKRNTVKPVGSKPTAFSKLTDKRXYEKGIYQKKIEDARRNRKMALQKKRRAKQ 583
           Q  N   + +     +PT ++  T K+  E    ++ +E  R+ RK    ++RR K+
Sbjct: 65  QFENFDESKIGREAEEPTIYNLPTFKKKQEPNTIEENLEVPRKVRKEQKPRRRRGKR 121


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 216 FQEIFNVFNITVFPPRFFILFRYMFLFL 133
           F E++N+ NI    P F +    MFL L
Sbjct: 6   FYELYNIKNIRPLIPSFHVCLLIMFLIL 33


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 443 KPVGSKPTAFSKLTDKRXYEKGIYQKKIEDARR 541
           K +G K T  SK+ ++   ++ + QKK++DA R
Sbjct: 304 KELGIKHTPNSKIINQISLQQWVKQKKVQDAWR 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,440
Number of Sequences: 5004
Number of extensions: 55630
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)