Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_B10
(925 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322... 31 1.3
11_01_0551 + 4361640-4363386,4363443-4363687 29 5.2
06_02_0239 + 13384451-13387124,13387234-13387631 29 6.9
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 6.9
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 28 9.1
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 28 9.1
05_03_0416 + 13684604-13688050 28 9.1
04_01_0619 - 8125611-8127967,8128449-8130123 28 9.1
>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
32233-33714
Length = 1189
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 324 NVFIFSFDTISSRVYDEDLTVRFCFKF 244
NVF S I+ V+D+D++ RFC ++
Sbjct: 946 NVFFTSLPVIAMGVFDQDVSARFCLRY 972
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/63 (22%), Positives = 34/63 (53%)
Frame = +2
Query: 395 LPDSKVQDPNTKRNTVKPVGSKPTAFSKLTDKRXYEKGIYQKKIEDARRNRKMALQKKRR 574
+ D K+ D N ++ +PV + P ++L +R + G + + ++ + +K +KK++
Sbjct: 256 MSDEKLTDNNGEQ--AQPVEALPNGQAELLTERAAQNGSFTTQAAESIKEKKKRAEKKKK 313
Query: 575 AKQ 583
K+
Sbjct: 314 KKK 316
>06_02_0239 + 13384451-13387124,13387234-13387631
Length = 1023
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3
Query: 431 VLYLDLAPLNRVGKISKHLGN 369
VL LDL LN VGKIS +GN
Sbjct: 87 VLVLDLQGLNLVGKISPSIGN 107
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -1
Query: 223 ADLPGNFQRL*YHSVSATLFYSFSIHVSFS*SPSFSTNI-NISVSKTSTRQSSVSXG 56
A LP +FQ L H++S + S + VSF+ + + +++ N+++ +ST+ + G
Sbjct: 372 ASLPDSFQSLGQHAISESFNSSTNSQVSFNTAETATSHYGNVNLDSSSTQGGYTASG 428
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 443 KPVGSKPTAFSKLTDKRXYEKGIYQKKIEDARRNRKMALQKKRRAKQVRQN 595
KP+ P++ K + Y+ + K+E+ARR RK+ + + VR N
Sbjct: 471 KPLACSPSSLPKFPPSKEYDARL---KLEEARRQRKVGGSVRPGRENVRIN 518
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 274 FIIDTGGDGIKTEDKDIKPISLKKL 348
++ DT G KT+D +KP+SL+ +
Sbjct: 719 YVKDTHGKWYKTDDSQVKPVSLENV 743
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 28.3 bits (60), Expect = 9.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 788 LPGCGTSTSGTSQLGVLGQVEASVRRRCSGNTCAAELVEE*TH--RIMLRGWFWNLVNLC 615
L GCG T+ +G L +EA CS C E ++ T+ R+ + G NLV C
Sbjct: 1070 LAGCGALTALPENIGKLSALEALYVGPCSAIQCLPESIKHLTNLRRLNISG-CPNLVKRC 1128
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 28.3 bits (60), Expect = 9.1
Identities = 27/97 (27%), Positives = 45/97 (46%)
Frame = -3
Query: 659 RIMLRGWFWNLVNLCPKGPN*NSVALVLLASSFAMPFSCSCAHLLFSSDKYPSHIXVYQL 480
+I+ G W L P N ++ ++ + S FA F+ L ++ KY I + +
Sbjct: 254 QILSLGGNWGLTGTIPGNNNTFNLPMLQMISLFANRFTGQIP-LGLANCKYIQIISIGEN 312
Query: 479 TY*RPLAWNLLVLQYFVLYLDLAPLNRVGKISKHLGN 369
++ P+ L L +L LDL N +G+I LGN
Sbjct: 313 SFEGPVPTWLSKLPDLLL-LDLGYNNLIGQIPSALGN 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,990,600
Number of Sequences: 37544
Number of extensions: 366135
Number of successful extensions: 1048
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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