Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B10
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical p...    30   2.0  
U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    29   6.2  
L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical
           protein C45G9.4 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 398 PDSK-VQDPNTKRNTVKPVGSKPTAFSKLTDKRXYEKGIYQ--KKIEDARRNRKMALQKK 568
           PD K +  P   + T     +KP   SK + KR  +KG++    K    +R++K A + K
Sbjct: 7   PDKKKLVSPKPTKTTSDKSKTKPRRSSKTSKKRKSKKGLFGCCAKKRKTKRSKKSAKRTK 66

Query: 569 RRA 577
           R A
Sbjct: 67  RSA 69


>U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical
           protein C45G9.9 protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 398 PDSK-VQDPNTKRNTVKPVGSKPTAFSKLTDKRXYEKGIYQ--KKIEDARRNRKMALQKK 568
           PD K +  P   + T     +KP   SK + KR  +KG++    K    +R++K A + K
Sbjct: 7   PDKKKLVSPKPTKTTSDKSKTKPRRSSKTSKKRKSKKGLFGCCAKKRKTKRSKKSAKRTK 66

Query: 569 RRA 577
           R A
Sbjct: 67  RSA 69


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
           protein B0496.3a protein.
          Length = 1551

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 398 PDSKVQDPNTKRNTVKPVGSKPTAFSKLTDK 490
           P+ + +DP T R T KP  S+  +F  + D+
Sbjct: 490 PEQQPEDPKTARGTSKPADSRAPSFVPVKDR 520


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
           protein B0496.3b protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 398 PDSKVQDPNTKRNTVKPVGSKPTAFSKLTDK 490
           P+ + +DP T R T KP  S+  +F  + D+
Sbjct: 490 PEQQPEDPKTARGTSKPADSRAPSFVPVKDR 520


>U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical
           protein C26B2.1 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 310 EDKDIKPISLKKLRRSKLGEFPKCFEILPTRFKGARSKYKTKYCKTSRFQAN 465
           E   +    LKK + +   + PKC  +L  R +        +YC+ S  +AN
Sbjct: 54  EPSSVPEARLKKHKCASCNDCPKCANVLSARTENDNVYLVCQYCRWSSREAN 105


>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 404 SKVQDPNTKRNTVKPVGSKPTAFSKLTDKRXYEKGIYQKKIEDARRNRKMALQKKRRAKQ 583
           S ++ P T  +    +    TA    +    +    +Q    DAR NRK    KKRR ++
Sbjct: 173 SPIEPPTTSLSPFIVLHHGGTAIQTSSQPPAFSPFTFQSIDFDARMNRKFRRNKKRRLRK 232

Query: 584 VRQNF 598
            + +F
Sbjct: 233 KKHDF 237


>L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical
           protein ZK688.10 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 594 FCRTCFARLFFCNAIF 547
           FC+ CF+R+F C+A +
Sbjct: 72  FCQECFSRIFLCSAAY 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,913
Number of Sequences: 27780
Number of extensions: 321059
Number of successful extensions: 1157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)