Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B10
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   5.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   9.0  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 220 QRLEERLGKFETKPDSEIFIIDTGGDGIKTEDKDIK 327
           +R EE+  K + KP+S       G  GI+++   +K
Sbjct: 266 KRKEEKAQKEKDKPNSTTMNGSPGSGGIRSDQMGVK 301


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 327 LNVFIFSFDTISSRVYDEDLTVRFCFK 247
           +N FI++F +   R+    LT R CFK
Sbjct: 354 INPFIYAFYSADFRLAFWRLTCRKCFK 380


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 623 LPDSRTI-PSTLCDEFIPPQA 682
           +P  R I PSTL   FIPP A
Sbjct: 138 IPRFRHIGPSTLFPRFIPPNA 158


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 788 LPGCGTSTSGTSQLGVLGQVEASVRRR 708
           LPG  T+TS   + G++   +  ++RR
Sbjct: 136 LPGKPTTTSDELKRGIINPEDVMLKRR 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,856
Number of Sequences: 438
Number of extensions: 3797
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)