Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B09
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1143 + 27971561-27972670,27973868-27974458                       30   2.9  
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    30   2.9  
05_04_0360 - 20617865-20619799                                         29   5.1  
05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846...    29   6.7  
01_06_1570 + 38312319-38314259                                         28   8.8  

>06_03_1143 + 27971561-27972670,27973868-27974458
          Length = 566

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 717 WTARRRLVILEVASLDRLAIVGWLYLYAVNWHLERL 610
           W A RR  + E+ S  R+    W+  +AV  HL RL
Sbjct: 129 WRALRRNFVAEIVSPPRVKGFSWIREWAVGSHLRRL 164


>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = -2

Query: 801 SSRSSVTPRXWWSAFASYRSPSPWAVCPWTARRRLVILEVASLDRLAIVGWLYLYAVNWH 622
           S RS VT    W ++A  ++    A+ P   +    +LE++  D   ++  LY    NWH
Sbjct: 531 SKRSGVTTTKTWGSWA--QALYELAMHPENYKNSDSLLEIS--DDFVVLNDLYPKCSNWH 586

Query: 621 LERLSEVETVKSLMIKKR 568
           L   S ++  + +++  R
Sbjct: 587 LSSTSYLQAKRHVLVVSR 604


>05_04_0360 - 20617865-20619799
          Length = 644

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 659 IARRSKEATSRITSRLRAVHGHTA 730
           +ARRS+E  S +T+R+   HG+ A
Sbjct: 471 LARRSREGQSHLTTRVAGTHGYLA 494


>05_04_0308 -
           20081366-20082404,20082702-20083078,20084293-20084679,
           20085038-20086000
          Length = 921

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 858 VRSVEVRKKKVTGMDSFVQSSRSSVTPRXWWSAFASYR 745
           +RS+E++     G D  V +S +S   + W++ F  Y+
Sbjct: 418 IRSLELQNNSCMGQDEEVVNSINSYVKQKWYAEFLGYK 455


>01_06_1570 + 38312319-38314259
          Length = 646

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 659 IARRSKEATSRITSRLRAVHGH 724
           +ARRS+E  S +T+R+   HG+
Sbjct: 471 LARRSREGQSHVTTRVAGTHGY 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,943
Number of Sequences: 37544
Number of extensions: 379793
Number of successful extensions: 1024
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)