Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B09
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    29   6.0  
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote...    28   7.9  

>Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical
           protein C47A10.10 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 161 VKEQLLKNTEFMNLSLRSSFRN*DSLNIPLLIICLPRSVGIFI-LYNY*YDSDVDILAVF 337
           +K  + KNT  M+ S   S      + IPL I+C+P  V +FI +++       +++ + 
Sbjct: 222 IKSMVSKNTFRMHKSFVRSLNF--QVAIPLFIVCIPFMVNVFIPMFSTDLQGTTNLICII 279

Query: 338 VKSYQDV 358
           + S   V
Sbjct: 280 IISMHGV 286


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 612 ASPDASLPHTDKASLQLQGGPKKQPQELQV 701
           A+P +SLP TD  +  +   PKK+P+E++V
Sbjct: 349 ATPSSSLP-TDIENKAVISSPKKEPEEIEV 377


>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 493 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 540


>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
           protein F45E10.1a protein.
          Length = 1583

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 493 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 540


>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
           protein F45E10.1d protein.
          Length = 1520

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 359 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 406


>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
           protein F45E10.1c protein.
          Length = 1654

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 493 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 540


>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 493 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 540


>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
           protein F45E10.1a protein.
          Length = 1583

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 493 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 540


>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical
           protein F45E10.1d protein.
          Length = 1520

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 359 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 406


>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
           protein F45E10.1c protein.
          Length = 1654

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 493 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 540


>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical
           protein F45E10.1e protein.
          Length = 1234

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 73  PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 120


>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
           UNC-53 protein.
          Length = 1583

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 600 PPQTASPDASLPHTDKASLQLQGGP----KKQPQELQVVFVQSTDIPP 731
           PP+   P   +     A  +L   P    K +P++LQ + + +TD+PP
Sbjct: 493 PPRDTQPTIGVVSPIMAHKKLTNDPVISEKPEPEKLQSMSIDTTDVPP 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,594,669
Number of Sequences: 27780
Number of extensions: 331304
Number of successful extensions: 873
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)