Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B07
         (872 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD82BF Cluster: PREDICTED: hypothetical protein;...    34   5.4  
UniRef50_UPI00005A0897 Cluster: PREDICTED: similar to Opsin-4 (M...    33   9.5  

>UniRef50_UPI0000DD82BF Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 313

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 100 VAWARMRRPSGVQRTSLEPL*TGRATERDSPRRLAT 207
           + WAR R  +  QR+ L PL   RA  R SPR+ AT
Sbjct: 117 IGWARQRPFASAQRSPLRPLSLWRAGGRPSPRQKAT 152


>UniRef50_UPI00005A0897 Cluster: PREDICTED: similar to Opsin-4
           (Melanopsin); n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to Opsin-4 (Melanopsin) - Canis
           familiaris
          Length = 561

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -1

Query: 212 CLVASRRGESRSVARPVHRGSSDVRXTPLGRRIRAHATTTPTCWGGRXXRWGP 54
           C  A  RG  RSVAR V R  +  R    G    +HA+ +PT  G R   W P
Sbjct: 35  CPGARLRGH-RSVARQVARLPAQHRRPGPGTAHGSHASVSPTAAGARAAAWAP 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,808,894
Number of Sequences: 1657284
Number of extensions: 11367268
Number of successful extensions: 21900
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21899
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)