Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B07
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   8.1  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 697 VLNAKRLTRNANLLSRRS*YLTCSQNK 617
           VL +KRL R++ + S    YLTC  NK
Sbjct: 278 VLISKRLYRSSEVASHTLTYLTCVANK 304


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 73   RPPQHVGVVVAWARMRRPSGVQRTSLEPL*TGRATERDSPRRLATRQTR 219
            +PP  +G   +  R  RP+  QR  +E + +G+ T  +    +A  QTR
Sbjct: 1321 QPPPFIGESRS-NRKPRPTKRQREIMEQVESGKLTSAEGAAAIAATQTR 1368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,081
Number of Sequences: 5004
Number of extensions: 48542
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)