Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B07
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732...    29   3.7  
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    29   4.9  
08_01_0078 - 551178-551897,552168-552197                               29   6.4  

>01_01_0926 +
           7324145-7324561,7324773-7324778,7325255-7325311,
           7325572-7325661,7325938-7325982,7326088-7326142,
           7326245-7326288,7326401-7326790,7327276-7327541,
           7328292-7328430,7328514-7328564,7329158-7329642,
           7329724-7330327,7330717-7331025
          Length = 985

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 111 GPRDHHANMLGRARXTLGTRKXDRXPRDGSAXG 13
           G R HH N+L R   TLG R  ++    G   G
Sbjct: 65  GRRGHHNNLLRRGNSTLGKRSKEKMGGGGGGGG 97


>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 203 ASRRGESRSVARPVHRGSSDVRXTPLGRRIRAHATTTPTCWGGRXXRWGPES 48
           +SRRG S S     HRG  + R +P   R  AH   T +          P+S
Sbjct: 472 SSRRGRSVSPEEHRHRGRRESRQSPRSSRSAAHGEDTSSVTDAASRSVDPDS 523


>08_01_0078 - 551178-551897,552168-552197
          Length = 249

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 218 RVCLVASRRGESRSVARPVHRGSSDVRXTPLGRRI 114
           RVC      G+ RS+  P+  G  +V    LGRR+
Sbjct: 180 RVCSYGQVVGKGRSMVLPIGHGGMEVTKLGLGRRV 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,744
Number of Sequences: 37544
Number of extensions: 301045
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)