Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B02
         (954 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    33   0.017
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            32   0.029
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     29   0.27 
AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein ...    27   0.63 
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   1.9  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   5.9  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 22/64 (34%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
 Frame = +2

Query: 758 PTPXGDPPGXXXXXPPXX--PPXR--PXNPXKKRPXXPXPXPPXXPXPPXAGHPKXPXPX 925
           P P G PPG     PP    PP    P  P   RP    P PP  P P     P    P 
Sbjct: 181 PNP-GMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPG 239

Query: 926 XXXG 937
              G
Sbjct: 240 MQPG 243



 Score = 27.9 bits (59), Expect = 0.48
 Identities = 18/62 (29%), Positives = 19/62 (30%)
 Frame = +2

Query: 716 GTXPXPXGGKXXXPPTPXGDPPGXXXXXPPXXPPXRPXNPXKKRPXXPXPXPPXXPXPPX 895
           G  P P G      P     PPG      P   P  P     +RP      PP  P  P 
Sbjct: 216 GMYPQPPGVPMPMRPQM---PPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNPM 272

Query: 896 AG 901
            G
Sbjct: 273 GG 274



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 25/104 (24%), Positives = 28/104 (26%), Gaps = 3/104 (2%)
 Frame = +3

Query: 651 PXPXPPXXDPPX-PRPXRXXGAAGPXPXQXAGXPXXPPHPXGIPRGKXPXAPQXXHQXGP 827
           P P      PP  P P R     G  P    G    PP   G+ R      P       P
Sbjct: 212 PRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNP 271

Query: 828 XTPXKSAXXXPXXXPXXXPXPPSXXIQKXRXPXXQXGGQP--PP 953
               +                PS  +   R P    GG P  PP
Sbjct: 272 MGGPR--PQISPQNSNLSGGMPSGMVGPPRPPMPMQGGAPGGPP 313



 Score = 23.8 bits (49), Expect = 7.8
 Identities = 15/58 (25%), Positives = 15/58 (25%)
 Frame = +2

Query: 764 PXGDPPGXXXXXPPXXPPXRPXNPXKKRPXXPXPXPPXXPXPPXAGHPKXPXPXXXXG 937
           P    PG         PP     P    P  P P  P    P   G P    P    G
Sbjct: 178 PARPNPGMPPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPG 235


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 31.9 bits (69), Expect = 0.029
 Identities = 28/84 (33%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
 Frame = +2

Query: 737 GGKXXXPPTPXGDPPGXXXXXPPXX--PPXR-------PXNPXKKR-----PXXPXPXPP 874
           GG    PP P   P G     PP    PP         P NP + R     P  P   PP
Sbjct: 525 GGPLGPPPPPP--PGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPP 582

Query: 875 XXPX-PPXAGHPKXPXPXXXXGGP 943
             P  PP  G P  P      GGP
Sbjct: 583 PAPPPPPPMGPPPSPLAGGPLGGP 606



 Score = 28.3 bits (60), Expect = 0.36
 Identities = 23/80 (28%), Positives = 23/80 (28%)
 Frame = +3

Query: 651 PXPXPPXXDPPXPRPXRXXGAAGPXPXQXAGXPXXPPHPXGIPRGKXPXAPQXXHQXGPX 830
           P   PP   PP P         GP P   AG P       G P G  P  P      G  
Sbjct: 577 PNAQPPPAPPPPP-------PMGPPPSPLAGGPL------GGPAGSRPPLPNLLGFGGAA 623

Query: 831 TPXKSAXXXPXXXPXXXPXP 890
            P       P   P   P P
Sbjct: 624 PPVTILVPYPIIIPLPLPIP 643


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 821 RPXNPXKKRPXXPXPXPPXXPXPPXAGHP 907
           RP  P    P  P   PP  P PP  G P
Sbjct: 78  RPGRPWWSVPGIPPFRPPWHPRPPFGGRP 106


>AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein
           protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = -1

Query: 948 GVGPPFXXWGXGXFGXPAXGGXGXXGGXGXGXXGRFFXGXXGLFGGXXGGXXXF 787
           G G PF   G G  G P+ G     GG      G+   G      G  GG   F
Sbjct: 113 GRGVPFFGQGGGQGGIPSFGSGQQNGGVPFLGNGQGQSGFPSFGNGQQGGNFPF 166


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 766  GCGGXXGFPAXWXGXGPAAPXXRXGRGXGGSXXGGXG 656
            GCGG  G      G G         +  GGS  GG G
Sbjct: 2028 GCGGGNGNENDDSGDGATGSGDNGSQHGGGSISGGGG 2064


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 721 GPAAPXXRXGRGXGGSXXGGXG 656
           GP  P    G G GG   GG G
Sbjct: 539 GPVGPAGVGGGGGGGGGGGGGG 560


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,533
Number of Sequences: 2352
Number of extensions: 7769
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 104603103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)