Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_B02
         (954 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.44 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.44
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 857 PXPXPPXXPXPPXAGHPKXPXPXXXXGGP 943
           P P P   P  P  G P  P      GGP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 25.4 bits (53), Expect = 0.76
 Identities = 12/35 (34%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
 Frame = +2

Query: 725 PXPXGGKXXXPPTPX-GDPPGXXXXXPPXXPPXRP 826
           P P       P  P  G PP      PP  PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 21/69 (30%), Positives = 21/69 (30%)
 Frame = +2

Query: 710  RRGTXPXPXGGKXXXPPTPXGDPPGXXXXXPPXXPPXRPXNPXKKRPXXPXPXPPXXPXP 889
            R GT       K   P T  G  PG      P      P  P    P      PP  P P
Sbjct: 1116 RPGTADNKPQLKPQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFT--PFNFWNPPPFMPSP 1173

Query: 890  PXAGHPKXP 916
              AG P  P
Sbjct: 1174 FMAGAPNVP 1182


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 707 GRRGTXPXPXGGKXXXPPTPXGDP 778
           G R   P P  G     PTP G P
Sbjct: 109 GYRSASPSPGMGHMGHTPTPNGHP 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,297
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)