Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A24
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   1.2  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    28   1.5  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    27   3.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   4.7  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
 Frame = +3

Query: 75  RTCRAFNXEKLLNLFTF-CIYLRLLIKYCSFKFDSFFTTTESHRTLVLKGLHTFIVLRPT 251
           ++C+    ++ L++ +  C    L++  CS +   F  +T++H TL+     TFI  + +
Sbjct: 8   KSCKTHLLDEGLDVSSIHCFDQYLIVGQCSGQVMVFDVSTDNHFTLI----QTFIAHKHS 63

Query: 252 LGTVSCL---GA*RVNISLXAQEEFNQFYTKWLLKRSPAR 362
           + ++ CL       V++S+   +E +    +WLLK    R
Sbjct: 64  VSSIVCLPFEADGIVDLSIITLDE-SGLLCQWLLKTCDRR 102


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +3

Query: 390 TPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPT 569
           TP Q+ +  ++   SL+   I+     + L+P +N  A+ L  ++ +     +P  +   
Sbjct: 64  TPEQSKQMFLYVAHSLQNSGIIDFEFSEELEPIRNAYADSLHNLLSKAFRSTLPMSSTKD 123

Query: 570 ASFSEEYLKPEQLYAST 620
           +  S  Y  P+ + A T
Sbjct: 124 SKKS-RYSSPDGVLAKT 139


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 6/164 (3%)
 Frame = +3

Query: 396 IQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQ---GNNGVMPQGTVP 566
           + T    V S+ S   + +  ++ LD L  +K  +   L G +H    G NGV   G V 
Sbjct: 121 LHTLSQFVNSKYSSDPQVLSSIMFLDLLLKKKPSET--LFGFMHSFFTGENGVSLGGGVE 178

Query: 567 TASFSEEYLKPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSF 746
                 + ++P Q + S  +  S+S F++    L    E  + +   D  +   KR    
Sbjct: 179 AWKGFYQSIRPNQGFMSVNVDISSSAFWRNDSLLQILMEYTDCSNVRDLTRFDLKRLSRK 238

Query: 747 DTPHTSFCLQGWDVQDD--NSPYGQAGFYSNTSMDTMF-RAFNG 869
                  C    +V  D  N  Y   GF S ++ D+ F R  NG
Sbjct: 239 FRFLKVTCQHRNNVGTDLANRVYSIEGFSSKSASDSFFVRRLNG 282


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 737 CPFFGFFMRINGPCLFFPFW 678
           C + G F+ INGPC  +  W
Sbjct: 239 CMYRGNFVTINGPCTTYMHW 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,876
Number of Sequences: 5004
Number of extensions: 76409
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)