Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A23
         (1073 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     31   1.6  
05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181     29   8.4  
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215...    29   8.4  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +1

Query: 706 KKSRXTPKTAXGPXTAXXGQPETRPXXPGGGXXXXPXKXKPNETTGPAEXXPAPXXGP 879
           K S   PK    P     G P+ +P  PG      P K  P     P +  P P  GP
Sbjct: 166 KPSPPKPKPGPKPKPPKPG-PKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGP 222


>05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181
          Length = 435

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 360 VVSXLMRVDPDPXGFXEDVAV 298
           V+  L+R+DPDP G   D+ V
Sbjct: 182 VIDFLLRIDPDPHGSCNDIGV 202


>04_04_1658 - 35119623-35119754,35121033-35121121,35121205-35121599,
            35122009-35122091,35122163-35124184,35124859-35124927,
            35125050-35125130,35125215-35125308,35125435-35125499,
            35125961-35126038,35126115-35126360
          Length = 1117

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 824  SPTKQRGRQKXXPPPXXAP 880
            +P KQRG+ K  PPP  AP
Sbjct: 990  APGKQRGKAKGAPPPPAAP 1008


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.132    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,062
Number of Sequences: 37544
Number of extensions: 158842
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3199551704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)