Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A23
         (1073 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   7.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   7.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   7.5  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 21/92 (22%), Positives = 24/92 (26%)
 Frame = +1

Query: 724 PKTAXGPXTAXXGQPETRPXXPGGGXXXXPXKXKPNETTGPAEXXPAPXXGPXXNKXTKR 903
           P     P     G P   P  P GG    P    P     P    P     P     +  
Sbjct: 266 PPRTGSPPPPPTGSP---PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 322

Query: 904 PXXNXXPPXTXXRXXXXNXRXXATXQPAXGTP 999
           P     PP    +      R   T  P  G+P
Sbjct: 323 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 354


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 21/92 (22%), Positives = 24/92 (26%)
 Frame = +1

Query: 724 PKTAXGPXTAXXGQPETRPXXPGGGXXXXPXKXKPNETTGPAEXXPAPXXGPXXNKXTKR 903
           P     P     G P   P  P GG    P    P     P    P     P     +  
Sbjct: 287 PPRTGSPPPPPTGSP---PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 343

Query: 904 PXXNXXPPXTXXRXXXXNXRXXATXQPAXGTP 999
           P     PP    +      R   T  P  G+P
Sbjct: 344 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 375


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 21/92 (22%), Positives = 24/92 (26%)
 Frame = +1

Query: 724 PKTAXGPXTAXXGQPETRPXXPGGGXXXXPXKXKPNETTGPAEXXPAPXXGPXXNKXTKR 903
           P     P     G P   P  P GG    P    P     P    P     P     +  
Sbjct: 272 PPRTGSPPPPPTGSP---PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 328

Query: 904 PXXNXXPPXTXXRXXXXNXRXXATXQPAXGTP 999
           P     PP    +      R   T  P  G+P
Sbjct: 329 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.308    0.132    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,318,907
Number of Sequences: 27780
Number of extensions: 113471
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2877115450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)