Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A18
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   140   2e-34
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   140   2e-34
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   140   2e-34
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    49   1e-06
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   2.7  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   4.7  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   6.2  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   8.2  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  140 bits (339), Expect = 2e-34
 Identities = 66/74 (89%), Positives = 72/74 (97%)
 Frame = +2

Query: 197 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 376
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 377 VTAMDVVYALKRQG 418
           VT++DVVY+LKRQG
Sbjct: 82  VTSLDVVYSLKRQG 95


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  140 bits (339), Expect = 2e-34
 Identities = 66/74 (89%), Positives = 72/74 (97%)
 Frame = +2

Query: 197 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 376
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 377 VTAMDVVYALKRQG 418
           VT++DVVY+LKRQG
Sbjct: 82  VTSLDVVYSLKRQG 95


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  140 bits (339), Expect = 2e-34
 Identities = 66/74 (89%), Positives = 72/74 (97%)
 Frame = +2

Query: 197 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 376
           +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 377 VTAMDVVYALKRQG 418
           VT++DVVY+LKRQG
Sbjct: 82  VTSLDVVYSLKRQG 95


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +2

Query: 236 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 415
           IR+LA     K+I+G + EE     ++F + +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +1

Query: 358 TRQEEDRHRYGCCVRSETPRSHPXTVSAVKEVSSTIFYFYFLSRERFNFFFSYTDNRA 531
           T ++E+  R       ET    P +    KE++ T++Y+YF   +  N+      ++A
Sbjct: 27  TEEQEEEFRSAVATVRETLLGVPISE---KEIADTVWYYYFDVEKSVNYLLQKASSKA 81


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 256 RWSETYLRSYIRRDPRRSQSVPRKRDPR 339
           +++   +R++IR D  RS+   +K DPR
Sbjct: 273 KYASQIMRAFIRIDFERSKKTKKKHDPR 300


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +1

Query: 220 HHETGYPSFGSQRWSETYLRSYIRRDPRRSQSVPRKRDPRRCHIHRTRQEEDRHRYGCCV 399
           HHE     FG+    ET  +  I+++ + S+ +P   +         R      R+ C V
Sbjct: 585 HHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTV 644

Query: 400 RSETPRSH-PXTVSAVKEV 453
           R E+P +    T+  VK V
Sbjct: 645 RVESPVNELNSTMEEVKNV 663


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 284 IYEETRGVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 418
           I +ET  VL    E+  I D+ T T+  KRK V    ++Y   R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,542
Number of Sequences: 5004
Number of extensions: 48312
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)