Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A18
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.          143   2e-36
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   2.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.6  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score =  143 bits (346), Expect = 2e-36
 Identities = 71/74 (95%), Positives = 71/74 (95%)
 Frame = +2

Query: 197 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 376
           VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH KRKT
Sbjct: 22  VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKT 81

Query: 377 VTAMDVVYALKRQG 418
           VTAMDVVYALK QG
Sbjct: 82  VTAMDVVYALKIQG 95


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 226 RDALDVITQHLPVTFSAPLSKTFASFTATGHLDELLGLCFVLVVAA 89
           R AL V T     T  +  +      +    +D  LG CFV+V A+
Sbjct: 252 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 297


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 226 RDALDVITQHLPVTFSAPLSKTFASFTATGHLDELLGLCFVLVVAA 89
           R AL V T     T  +  +      +    +D  LG CFV+V A+
Sbjct: 252 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 297


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 226 RDALDVITQHLPVTFSAPLSKTFASFTATGHLDELLGLCFVLVVAA 89
           R AL V T     T  +  +      +    +D  LG CFV+V A+
Sbjct: 191 RVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 236


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 238 PSFGSQRWSETYLRSYIRRDPRRSQSVPRKRDPRRCHIHRTRQEED 375
           PS   + W+E +L + +R DP +  ++  +    + + H TRQ ED
Sbjct: 22  PSVMLKIWTEEFLSTILRLDP-KFIALHCQEVGGKNYEHSTRQVED 66


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 406 QSVHNIHSGDGLPLGVFGVCDSVADHV--FEEHFENAAGLFVYKTGDT 269
           Q +H++H+     + +  V DS  +HV  + +   N  G  V   GD+
Sbjct: 324 QMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGNGDS 371


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 406 QSVHNIHSGDGLPLGVFGVCDSVADHV--FEEHFENAAGLFVYKTGDT 269
           Q +H++H+     + +  V DS  +HV  + +   N  G  V   GD+
Sbjct: 324 QMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGNGDS 371


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 400 VHNIHSGDGLPLGVFG 353
           VHN+H   G+  G+FG
Sbjct: 331 VHNLHGMPGILGGIFG 346


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -2

Query: 324 SRNTLRTPRVSSYIRPEIRFTPPLRAKR 241
           +++ ++T  ++ +  PE++ TP  +AKR
Sbjct: 387 NQDVVQTHVLTIHTIPEVKVTPRFQAKR 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,510
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)