Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A17
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    28   2.0  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    28   2.0  
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa...    28   2.0  
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos...    28   2.0  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.7  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    26   6.2  

>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/71 (21%), Positives = 33/71 (46%)
 Frame = +3

Query: 420 FLQALNKYPEKSPIRTSLLMELASNLSTLGHKAEAISYYQQALDTVVDYTMKLMALWNLM 599
           F   +    +K  I+T+ + E  ++L T   K     Y    + T  ++   L+ +W+++
Sbjct: 57  FTNTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSII 116

Query: 600 ILRIDSEKFSM 632
           I+    +KF +
Sbjct: 117 IVFAVDKKFEV 127


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/71 (21%), Positives = 33/71 (46%)
 Frame = +3

Query: 420 FLQALNKYPEKSPIRTSLLMELASNLSTLGHKAEAISYYQQALDTVVDYTMKLMALWNLM 599
           F   +    +K  I+T+ + E  ++L T   K     Y    + T  ++   L+ +W+++
Sbjct: 57  FTNTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSII 116

Query: 600 ILRIDSEKFSM 632
           I+    +KF +
Sbjct: 117 IVFAVDKKFEV 127


>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
           family 9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/71 (21%), Positives = 33/71 (46%)
 Frame = +3

Query: 420 FLQALNKYPEKSPIRTSLLMELASNLSTLGHKAEAISYYQQALDTVVDYTMKLMALWNLM 599
           F   +    +K  I+T+ + E  ++L T   K     Y    + T  ++   L+ +W+++
Sbjct: 57  FTNTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSII 116

Query: 600 ILRIDSEKFSM 632
           I+    +KF +
Sbjct: 117 IVFAVDKKFEV 127


>SPBC1348.01 |||S. pombe specific DUF999 protein family
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/71 (21%), Positives = 33/71 (46%)
 Frame = +3

Query: 420 FLQALNKYPEKSPIRTSLLMELASNLSTLGHKAEAISYYQQALDTVVDYTMKLMALWNLM 599
           F   +    +K  I+T+ + E  ++L T   K     Y    + T  ++   L+ +W+++
Sbjct: 57  FTNTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSYYPDGRISTRSNFRWPLLIIWSII 116

Query: 600 ILRIDSEKFSM 632
           I+    +KF +
Sbjct: 117 IVFAVDKKFEV 127


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 300 LGEAEHYISAARQFIKAEMKLKSMKFYSPERENLEAGIGCFLQALNKYPEKSPIRTSLLM 479
           L E    I   +  +  E+KL        ER  L+A +   L+ L      SP+  + + 
Sbjct: 50  LNEVSSDIRNYQASLTKELKLLVDSLQEKERSKLQATVK--LEQLKVVSTNSPVENTQIS 107

Query: 480 ELASNLSTLGHKAEAI 527
           EL + LS+L  +   I
Sbjct: 108 ELEARLSSLSKEINDI 123


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +3

Query: 285 SVGNFLGEAEHYISAARQFIKAEMKLKSMKFYSPERENLEAGIGCFLQALNKYPEKSPIR 464
           + G+   E +  +  A Q I+   K+K  +      + L   +  F +    +P +    
Sbjct: 19  TTGSISEEEKESLEVAAQCIQDSFKIKPEEIKPKSGDRL---VAAFEEYEKLHPVEEDST 75

Query: 465 TSLLMELASNLSTLGHKAEAISYYQQALD 551
             +  E A  L   G+ A A   YQ+ALD
Sbjct: 76  AHVNKEEAEKLKLEGNNAIAAKDYQKALD 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,792
Number of Sequences: 5004
Number of extensions: 72269
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)