Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A16
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.96 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 406 GPGGARGGXXRXXHPPXPFG*GXGGGGXXP 495
           GPGG  GG       P  FG G GG G  P
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = -2

Query: 946 GXGPXXXXXGXDXXGGXPXXXXFGXGATXXGGGXXGGRGXP 824
           G GP     G    GG P    FG G    GGG  G  G P
Sbjct: 227 GGGPGGFEGGPGGFGGGP--GGFGGGLGGFGGGPGGFGGGP 265



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +1

Query: 364 GPXAXKXXXXFXXXGPGGARGGXXRXXHPPXPFG*GXGGGG 486
           GP   +        GPGG  GG       P  FG G GG G
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 802  PPPPXPXTXXPAPPXXPPRXXXXPXQXP 885
            P PP P    P PP  PP     P   P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
 Frame = +3

Query: 795  GRXXPXXPXXGXP-RPPXXPPPXXVAPXPXXXXXGXPPXXSXP 920
            G   P  P    P RP    PP   AP P       PP  S P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 602 PPXPPAGXXASLGPXXGGXPXPPPXXXAGXXRXW 501
           PP PP    A  GP     P PPP   AG  R +
Sbjct: 762 PPPPPPPGVAGAGPPP--PPPPPPAVSAGGSRYY 793



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +1

Query: 802 PPPPXPXTXXPAPPXXPPRXXXXPXQXPXXXGXPXXGPXLXXXXXGP 942
           PPPP P    P P    P     P   P   G P   P       GP
Sbjct: 732 PPPPPPAVIVPTP---APAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 806 PXRAXXRXXPPPXXPPPGXXXXXPKXP 886
           P  A     PPP  PPPG     P  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 802 PPPPXPXTXXPAPPXXPP 855
           PPPP P      PP  PP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +3

Query: 807 PXXPXXGXPRPPXXPPPXXVAPXPXXXXXGXPPXXSXPXXXKXGPXP 947
           P  P  G P PP  PPP  VA          PP  S        P P
Sbjct: 753 PPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +3

Query: 807 PXXPXXGXPRPPXXPPPXXVAPXPXXXXXGXPPXXSXPXXXKXGPXP 947
           P  P    P P   P P    P P     G PP    P     GP P
Sbjct: 734 PPPPAVIVPTPAPAPIP---VPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 802 PPPPXPXTXXPAPPXXPP 855
           PPPP P    P+ P  PP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,960
Number of Sequences: 5004
Number of extensions: 19377
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)