Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A15
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   4.9  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    27   4.9  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.5  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    26   6.5  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 649 RALSCSR--PCRLPEYLSAFLPSGSVA 723
           RA++ S   P   P+ L++FLPSGSV+
Sbjct: 189 RAIAASEISPSSSPQLLTSFLPSGSVS 215


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 21  GXARESLNSIIVGTAAADLPLAERLIG 101
           G   E L+ +++     DLPL ERL+G
Sbjct: 232 GTQHEWLHDLVIAMNVGDLPLFERLMG 258


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 634 PGKLPRALSCSRPCRLPEYLSAFL 705
           P K+P++L  + P RLP Y+S+ L
Sbjct: 150 PSKIPKSLPSNSPVRLP-YISSLL 172


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 493 KRPGTVKRPRLLAFFHRLRPPDEHHKNR--RSSQRWRNPTGL 612
           K+P T  +P  +  F+ L   D  HK+R  R  +R R+ TG+
Sbjct: 97  KKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTGI 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,188
Number of Sequences: 5004
Number of extensions: 59908
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)