Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_A15
         (921 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL627443-2|CAI14269.1|  435|Homo sapiens T, brachyury homolog (m...    31   5.9  
AJ001699-1|CAA04938.1|  435|Homo sapiens Brachyury (T) protein p...    31   5.9  
BC142728-1|AAI42729.1|  417|Homo sapiens SAMD14 protein protein.       31   7.8  
BC141822-1|AAI41823.1|  417|Homo sapiens SAMD14 protein protein.       31   7.8  
BC047081-1|AAH47081.1|  427|Homo sapiens SAMD14 protein protein.       31   7.8  
BC029872-1|AAH29872.1|  247|Homo sapiens SAMD14 protein protein.       31   7.8  

>AL627443-2|CAI14269.1|  435|Homo sapiens T, brachyury homolog
           (mouse) protein.
          Length = 435

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = +2

Query: 464 RKEH--VSKRPAKGQEP*KGRVCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL 637
           R +H  + + P   Q+P   +  W    G++ L        Q  G  +        R+P 
Sbjct: 223 RSDHKEMMEEPGDSQQPGYSQWGWLLP-GTSTLCPPANPHPQFGGALSLPSTHSCDRYPT 281

Query: 638 XSSLVRSPVPDPAAYRNTCPPFS 706
             S   SP P P A+RN  P +S
Sbjct: 282 LRSHRSSPYPSPYAHRNNSPTYS 304


>AJ001699-1|CAA04938.1|  435|Homo sapiens Brachyury (T) protein
           protein.
          Length = 435

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = +2

Query: 464 RKEH--VSKRPAKGQEP*KGRVCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPL 637
           R +H  + + P   Q+P   +  W    G++ L        Q  G  +        R+P 
Sbjct: 223 RSDHKEMMEEPGDSQQPGYSQWGWLLP-GTSTLCPPANPHPQFGGALSLPSTHSCDRYPT 281

Query: 638 XSSLVRSPVPDPAAYRNTCPPFS 706
             S   SP P P A+RN  P +S
Sbjct: 282 LRSHRSSPYPSPYAHRNNSPTYS 304


>BC142728-1|AAI42729.1|  417|Homo sapiens SAMD14 protein protein.
          Length = 417

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 561 ASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLFPTL 674
           ASQ+STL  +   P  + KIP   PW    C+  + TL
Sbjct: 272 ASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 308


>BC141822-1|AAI41823.1|  417|Homo sapiens SAMD14 protein protein.
          Length = 417

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 561 ASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLFPTL 674
           ASQ+STL  +   P  + KIP   PW    C+  + TL
Sbjct: 272 ASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 308


>BC047081-1|AAH47081.1|  427|Homo sapiens SAMD14 protein protein.
          Length = 427

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 561 ASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLFPTL 674
           ASQ+STL  +   P  + KIP   PW    C+  + TL
Sbjct: 282 ASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 318


>BC029872-1|AAH29872.1|  247|Homo sapiens SAMD14 protein protein.
          Length = 247

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 561 ASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLFPTL 674
           ASQ+STL  +   P  + KIP   PW    C+  + TL
Sbjct: 102 ASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,713,203
Number of Sequences: 237096
Number of extensions: 2543266
Number of successful extensions: 7620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7620
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)